Pavir.Ab01899 (Panicum virgatum)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Pavir.Ab01899 T181664_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab01899.1.p FAR1 93 181
Pavir.Ab01899.2.p FAR1 93 181
Pavir.Ab01899.3.p FAR1 93 181
Pavir.Ab01899.4.p FAR1 93 181

Links

Other FAR1 family TFs
Other Panicum virgatum TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_5DS_620A46565 Triticum aestivum Traes_5DS_620A46565 N 0.708
OS06G0166100 Oryza sativa OS06G0166100 N 0.708
OS12G0160900 Oryza sativa OS12G0160900 N 0.719
Sb04g022400 Sorghum bicolor Sb04g022400 N 0.944
Sb08g003780 Sorghum bicolor Sb08g003780 N 0.730
Si009370m.g Setaria italica Si009370m.g N 0.719
Si016477m.g Setaria italica Si016477m.g N 0.978
Traes_4AL_8B3A3CC2F Triticum aestivum Traes_4AL_8B3A3CC2F N 0.876
Traes_5AS_385093B54 Triticum aestivum Traes_5AS_385093B54 N 0.708
Traes_5BS_BCC406654 Triticum aestivum Traes_5BS_BCC406654 N 0.708
OS02G0550900 Oryza sativa OS02G0550900 N 0.944
Traes_7BS_1B525AFF5 Triticum aestivum Traes_7BS_1B525AFF5 N 0.708
Traes_7DS_016F8E2EA Triticum aestivum Traes_7DS_016F8E2EA N 0.876
Traes_7DS_559DD9894 Triticum aestivum Traes_7DS_559DD9894 N 0.708
TRIUR3_03719 Triticum urartu TRIUR3_03719 N 0.708
TRIUR3_25143 Triticum urartu TRIUR3_25143 N 0.708
Pavir.Aa01718 Panicum virgatum Pavir.Aa01718 N 0.989
Pavir.Ca00202 Panicum virgatum Pavir.Ca00202 N 0.719
Pavir.Cb02030 Panicum virgatum Pavir.Cb02030 N 0.719
OB12G13670 Oryza brachyantha OB12G13670 N 0.730
BGIOSGA022378 Oryza indica BGIOSGA022378 N 0.708
BGIOSGA037035 Oryza indica BGIOSGA037035 N 0.719
BRADI3G45470 Brachypodium distachyon BRADI3G45470 N 0.955
BRADI4G41960 Brachypodium distachyon BRADI4G41960 N 0.708
GRMZM2G034868 Zea mays GRMZM2G034868 N 0.719
GRMZM2G043250 Zea mays GRMZM2G043250 N 0.966
MLOC_13034 Hordeum vulgare MLOC_13034 N 0.708
MLOC_43316 Hordeum vulgare MLOC_43316 N 0.876
OB02G27690 Oryza brachyantha OB02G27690 N 0.944
BGIOSGA006277 Oryza indica BGIOSGA006277 N 0.944
OLONG_000187 Oryza longistaminata OLONG_000187 N 0.719
OLONG_002410 Oryza longistaminata OLONG_002410 N 0.787
OLONG_014957 Oryza longistaminata OLONG_014957 N 0.708
ONIVA02G22250 Oryza nivara ONIVA02G22250 N 0.944
ONIVA06G05610 Oryza nivara ONIVA06G05610 N 0.708
ORGLA02G0172700 Oryza glaberrima ORGLA02G0172700 N 0.944
ORGLA06G0040800 Oryza glaberrima ORGLA06G0040800 N 0.708
ORGLA12G0035900 Oryza glaberrima ORGLA12G0035900 N 0.719