CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

DAPPUDRAFT_17917 *(Daphnia pulex)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	DAPPUDRAFT_17917	T184996_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXF2 M02680_2.00	Homo sapiens	BNHNSRTAAACAHN	NDTGTTTAYSNDNV	SELEX Mathelier et al.(2014) MA0030.1	0.804	0.965
FOXF2 M10548_2.00	Homo sapiens	BNHNBRTAAACAHNVN	NBNDTGTTTAYVNDNV	Transfac Matys et al.(2006) V$FREAC2_01	0.804	0.965
FOXF1 M10529_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL5_Q3	0.788	0.965
FOXF1 M10530_2.00	Homo sapiens	YRHATAAACAHNB	VNDTGTTTATDYR	Transfac Matys et al.(2006) V$HFH8_01	0.788	0.965
FOXE1 M04845_2.00	Homo sapiens	BVYTAWRYAAACADN	NHTGTTTRYWTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_HT-SELEX	0.728	0.605
FOXE1 M04846_2.00	Homo sapiens	BVYTAARYAAACAWH	DWTGTTTRYTTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_Methyl-HT-SELEX	0.728	0.605
FOXD2 M03042_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD2_1	0.721	0.628
FOXD2 M03043_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD2_2	0.721	0.628
FOXD2 M04851_2.00	Homo sapiens	HWASAATAAYAWWN	NWWTRTTATTSTWD	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_1	0.721	0.628
FOXD2 M04852_2.00	Homo sapiens	VYWANRTAAAYAH	DTRTTTAYNTWRB	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_2	0.721	0.628
FOXD1 M02681_2.00	Homo sapiens	GTAAACAD	HTGTTTAC	SELEX Mathelier et al.(2014) MA0031.1	0.721	0.628
Foxd1 M10570_2.00	Mus musculus	SYWAWGTAAACADHVN	NBDHTGTTTACWTWRS	Transfac Matys et al.(2006) V$FREAC4_01	0.721	0.628
FOXD1 M10567_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FREAC4_02	0.721	0.628
FOXD2 M04853_2.00	Homo sapiens	HWACAATAACRWWN	NWWYGTTATTGTWD	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_1	0.721	0.628
FOXD2 M04854_2.00	Homo sapiens	RYTRNGTMAACRD	HYGTTKACNYARY	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_2	0.721	0.628
Gm5294 M01984_2.00	Mus musculus	NNKRTAAACANN	NNTGTTTAYMNN	PBM Weirauch et al.(2014) pTH3802	0.718	0.523
FOXD4L4 M10564_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXD4L4_01	0.716	0.605
FOXD3 M03044_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD3_1	0.714	0.616
FOXD3 M03045_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD3_2	0.714	0.616
FOXD3 M04855_2.00	Homo sapiens	VHWRHRTAMACW	WGTKTAYDYWDB	SELEX Yin et al.(2017) FOXD3_eDBD_HT-SELEX	0.714	0.616
Foxd3 M09114_2.00	Mus musculus	DVNWRDRNAAACAVN	NBTGTTTNYHYWNBH	Misc Kulakovskiy et al.(2013) FOXD3_MOUSE.H11MO.0.C	0.714	0.616
FOXD3 M10565_2.00	Homo sapiens	RADHAAAYAWWH	DWWTRTTTDHTY	Transfac Matys et al.(2006) V$FOXD3_01	0.714	0.616
FOXD3 M10566_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HFH2_Q5	0.714	0.616
FOXD3 M04856_2.00	Homo sapiens	VYWRHRTAAACW	WGTTTAYDYWRB	SELEX Yin et al.(2017) FOXD3_eDBD_Methyl-HT-SELEX	0.714	0.616
foxe3 M01228_2.00	Xenopus tropicalis	WNNVHHMAYW	WRTKDDBNNW	PBM Lambert et al.(2019) pTH9824	0.713	0.605
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.708	0.570
Foxl1 M00164_2.00	Mus musculus	NNNRTMAAYA	TRTTKAYNNN	PBM Badis et al.(2009) Foxl1_2809	0.707	0.651
FOXL1 M03034_2.00	Homo sapiens	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) FOXL1_1	0.707	0.640
FOXL1 M03035_2.00	Homo sapiens	NRTAAAYAAAYAN	NTRTTTRTTTAYN	SELEX Jolma et al.(2013) FOXL1_2	0.707	0.640
FOXL1 M10558_2.00	Homo sapiens	DHNVHATAAAYAHNNN	NNNDTRTTTATDBNDH	Transfac Matys et al.(2006) V$FREAC7_01	0.707	0.640
FOXL2 M04847_2.00	Homo sapiens	NVBGHMAACAH	DTGTTKDCVBN	SELEX Yin et al.(2017) FOXL2_FL_HT-SELEX	0.705	0.651
Foxl2 M09112_2.00	Mus musculus	DWDWRTAAACA	TGTTTAYWHWH	Misc Kulakovskiy et al.(2013) FOXL2_MOUSE.H11MO.0.C	0.705	0.651
FOXL2 M10560_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q2	0.705	0.651
FOXL2 M10561_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q5	0.705	0.651
FOXL2 M04848_2.00	Homo sapiens	HVCGWMAACAH	DTGTTKWCGBD	SELEX Yin et al.(2017) FOXL2_FL_Methyl-HT-SELEX	0.705	0.651
bin M03752_2.00	Drosophila melanogaster	HTAATGTAAACAAW	WTTGTTTACATTAD	SELEX Nitta et al.(2015) bin_1	0.700	0.663
bin M06199_2.00	Drosophila melanogaster	TAAACARVGA	TCBYTGTTTA	B1H Zhu et al.(2011) bin_FlyReg_FBgn0045759	0.700	0.663
bin M06200_2.00	Drosophila melanogaster	RTAAACA	TGTTTAY	B1H Zhu et al.(2011) bin_SANGER_5_FBgn0045759	0.700	0.663
fd59A M03739_2.00	Drosophila melanogaster	HWAWRTAAACAWW	WWTGTTTAYWTWD	SELEX Nitta et al.(2015) fd59A_1	0.697	0.593
fd59A M03740_2.00	Drosophila melanogaster	WWAVAATAACAHN	NDTGTTATTBTWW	SELEX Nitta et al.(2015) fd59A_2	0.697	0.593
fd59A M03741_2.00	Drosophila melanogaster	YWRWRTAAAYAHH	DDTRTTTAYWYWR	SELEX Nitta et al.(2015) fd59A_3	0.697	0.593
fd59A M03742_2.00	Drosophila melanogaster	MWACAAYAAYAHW	WDTRTTRTTGTWK	SELEX Nitta et al.(2015) fd59A_4	0.697	0.593
let-381 M00664_2.00	Caenorhabditis elegans	RTAAACAW	WTGTTTAY	PBM Narasimhan et al.(2015) pTH9057	0.686	0.651
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.667	0.651
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.667	0.651
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.667	0.651
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.667	0.651
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.667	0.651
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.667	0.651
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.667	0.651
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.667	0.651
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.667	0.651
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.667	0.651
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.667	0.651
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.667	0.651
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.667	0.651
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.667	0.651
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.667	0.651
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.667	0.651
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.667	0.651
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.667	0.651
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.667	0.651
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.667	0.651
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.667	0.640
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.667	0.640
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.667	0.640
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.667	0.640
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.667	0.640
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EFX89076	Forkhead	6	95	KPPYSYIALIVMAIQSSASKRLTLSEIYQFLQQRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGSF

Links
Other Forkhead family TFs
Other *Daphnia pulex* TFs

987 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CEBPG	Homo sapiens	ENSG00000153879	D
Cebpg	Mus musculus	ENSMUSG00000056216	D
cebpg	Takifugu rubripes	ENSTRUG00000006448	I
tetur11g01620	Tetranychus urticae	tetur11g01620	I
tetur02g05060	Tetranychus urticae	tetur02g05060	I
TC009211	Tribolium castaneum	TC009211	I
KGM_20079	Danaus plexippus	KGM_20079	I
HMEL013192	Heliconius melpomene	HMEL013192	I
ENSXMAG00000019691	Xiphophorus maculatus	ENSXMAG00000019691	I
CEBPG	Vicugna pacos	ENSVPAG00000007215	I
ENSTSYG00000002513	Tarsius syrichta	ENSTSYG00000002513	I
YQE_08773	Dendroctonus ponderosae	YQE_08773	I
cebpg	Tetraodon nigroviridis	ENSTNIG00000001629	I
CEBPG	Taeniopygia guttata	ENSTGUG00000009474	I
ENSSTOG00000007596	Ictidomys tridecemlineatus	ENSSTOG00000007596	I
CEBPG	Sus scrofa	ENSSSCG00000002867	I
ENSSHAG00000014577	Sarcophilus harrisii	ENSSHAG00000014577	I
CEBPG	Sorex araneus	ENSSARG00000004224	I
Cebpg	Rattus norvegicus	ENSRNOG00000021144	I
CEBPG	Pteropus vampyrus	ENSPVAG00000012689	I
CEBPG	Pan troglodytes	ENSPTRG00000010808	I
Ogr04139	Ophisaurus gracilis	Ogr04139	I
ASIS008585	Anopheles sinensis	ASIS008585	I
AATE011183	Anopheles atroparvus	AATE011183	I
cebpg	Xenopus tropicalis	XB-GENE-919758	I
cebpg.L	Xenopus laevis	XB-GENE-6077777	I
LDEC004833	Leptinotarsa decemlineata	LDEC004833	I
estExt_fgenesh2_pg.C_760066	Branchiostoma floridae	estExt_fgenesh2_pg.C_760066	I
estExt_fgenesh2_pg.C_570127	Branchiostoma floridae	estExt_fgenesh2_pg.C_570127	I
Tal_R011314	Tyto alba	Tal_R011314	I
Pvit_06802	Pogona vitticeps	Pvit_06802	I
ENSPPYG00000009828	Pongo abelii	ENSPPYG00000009828	I
Myotis_brandtii_CEBPG_10035215	Myotis brandtii	Myotis_brandtii_CEBPG_10035215	I
Gfo_R009960	Geospiza fortis	Gfo_R009960	I
ENSP00000284000	Macaca fascicularis	ENSP00000284000	I
ENSBTAP00000023345-D1	Bos grunniens	ENSBTAP00000023345-D1	I
Cmyd_10014706	Chelonia mydas	Cmyd_10014706	I
Brh_R009933	Buceros rhinoceros	Brh_R009933	I
Afo_R014000	Aptenodytes forsteri	Afo_R014000	I
Aan_R003393	Calypte anna	Aan_R003393	I
cebpg	Danio rerio	ENSDARG00000036073	I
CEBPG	Gorilla gorilla	ENSGGOG00000012138	I
ENSGALG00000004867	Gallus gallus	ENSGALG00000004867	I
cebpg	Gasterosteus aculeatus	ENSGACG00000017539	I
CEBPG	Felis catus	ENSFCAG00000028096	I
ENSFALG00000014352	Ficedula albicollis	ENSFALG00000014352	I
CEBPG	Echinops telfairi	ENSETEG00000017071	I
CEBPG	Erinaceus europaeus	ENSEEUG00000012797	I
CEBPG	Equus caballus	ENSECAG00000004879	I
CEBPG	Dasypus novemcinctus	ENSDNOG00000003950	I
ENSLACG00000005088	Latimeria chalumnae	ENSLACG00000005088	I
ENSCSAG00000018517	Chlorocebus sabaeus	ENSCSAG00000018517	I
ENSCPOG00000014835	Cavia porcellus	ENSCPOG00000014835	I
CEBPG	Callithrix jacchus	ENSCJAG00000035363	I
CEBPG	Canis familiaris	ENSCAFG00000007405	I
CEBPG	Bos taurus	ENSBTAG00000017560	I
ENSAPLG00000000568	Anas platyrhynchos	ENSAPLG00000000568	I
ENSAMXG00000026123	Astyanax mexicanus	ENSAMXG00000026123	I
ENSAMEG00000018841	Ailuropoda melanoleuca	ENSAMEG00000018841	I
ENSNLEG00000018562	Nomascus leucogenys	ENSNLEG00000018562	I
CEBPG	Anolis carolinensis	ENSACAG00000013617	I
ENSPANG00000016413	Papio anubis	ENSPANG00000016413	I
cebpg	Oryzias latipes	ENSORLG00000018652	I
CEBPG	Ochotona princeps	ENSOPRG00000012139	I
ENSONIG00000020606	Oreochromis niloticus	ENSONIG00000020606	I
CEBPG	Otolemur garnettii	ENSOGAG00000010436	I
CEBPG	Oryctolagus cuniculus	ENSOCUG00000017036	I
ENSOARG00000011183	Ovis aries	ENSOARG00000011183	I
CEBPG	Ornithorhynchus anatinus	ENSOANG00000008143	I
ENSPSIG00000000373	Pelodiscus sinensis	ENSPSIG00000000373	I
ENSMPUG00000018937	Mustela putorius furo	ENSMPUG00000018937	I
CEBPG	Monodelphis domestica	ENSMODG00000023494	I
CEBPG	Macaca mulatta	ENSMMUG00000006127	I
CEBPG	Myotis lucifugus	ENSMLUG00000005181	I
ENSMICG00000013426	Microcebus murinus	ENSMICG00000013426	I
CEBPG	Meleagris gallopavo	ENSMGAG00000015603	I
ENSLOCG00000017587	Lepisosteus oculatus	ENSLOCG00000017587	I
CEBPG	Loxodonta africana	ENSLAFG00000017998	I

DAPPUDRAFT_17917 (Daphnia pulex) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

987 Related TFs

DAPPUDRAFT_17917 **(Daphnia pulex)
Forkhead**