CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

FOXP4 *(Callithrix jacchus)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	ENSCJAG00000004180	T185353_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXP1 M00836_2.00	Homo sapiens	NRTMAACANN	NNTGTTKAYN	PBM Gabut et al.(2011) pEX0123	0.798	0.926
FOXP1 M00837_2.00	Homo sapiens	DGTAAACAA	TTGTTTACH	PBM Gabut et al.(2011) pEX0124	0.798	0.926
FOXP1 M01976_2.00	Homo sapiens	RTAAACAA	TTGTTTAY	PBM Weirauch et al.(2014) pTH5656	0.798	0.926
Foxp1 M00793_2.00	Mus musculus	NRTMAAYAN	NTRTTKAYN	PBM Weirauch et al.(2013) pTH3855	0.798	0.926
FOXP1 M04811_2.00	Homo sapiens	NTGTTTRYNRTNNNNNNBNAYRVWMAACAN	NTGTTKWBYRTNVNNNNNNAYNRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_HT-SELEX	0.798	0.926
FOXP1 M08115_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0481.2	0.798	0.926
FOXP1 M09086_2.00	Homo sapiens	RKAAACAVM	KBTGTTTMY	Misc Kulakovskiy et al.(2013) FOXP1_HUMAN.H11MO.0.A	0.798	0.926
FOXP1 M09541_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	Misc Heinz et al.(2010) H9-FOXP1_GSE31006	0.798	0.926
FOXP1 M10536_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXP1_01	0.798	0.926
FOXP1 M04812_2.00	Homo sapiens	NTGTTTRYBRTNNNNNNBNAYRVWMAACAH	DTGTTKWBYRTNVNNNNNNAYVRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_Methyl-HT-SELEX	0.798	0.926
Foxp2 M00792_2.00	Mus musculus	RTAAACAD	HTGTTTAY	PBM Weirauch et al.(2013) pTH1288	0.789	0.901
FOXP2 M05866_2.00	Homo sapiens	RTAAAYAWNN	NNWTRTTTAY	SMiLE-seq Isakova et al.(2017) FOXP2	0.789	0.901
FOXP2 M08116_2.00	Homo sapiens	NDGTAAACAVN	NBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0593.1	0.789	0.901
FOXP2 M09089_2.00	Homo sapiens	DGTAAACAV	BTGTTTACH	Misc Kulakovskiy et al.(2013) FOXP2_HUMAN.H11MO.0.C	0.789	0.901
Foxp2 M09101_2.00	Mus musculus	NGTAAACAN	NTGTTTACN	Misc Kulakovskiy et al.(2013) FOXP2_MOUSE.H11MO.0.A	0.789	0.901
FoxP M03753_2.00	Drosophila melanogaster	AAACAACAACAA	TTGTTGTTGTTT	SELEX Nitta et al.(2015) CG16899_1	0.773	0.728
FoxP M06201_2.00	Drosophila melanogaster	VRTAAACAA	TTGTTTAYB	B1H Zhu et al.(2011) CG16899_SANGER_5_FBgn0037735	0.773	0.728
FoxP M06202_2.00	Drosophila melanogaster	VNNVBBAAAAAAAD	HTTTTTTTVVBNNB	B1H Zhu et al.(2011) CG2052_SANGER_2.5_FBgn0039905	0.773	0.728
FoxP M06203_2.00	Drosophila melanogaster	NNNNNRAAAAAAWNN	NNWTTTTTTYNNNNN	B1H Zhu et al.(2011) CG2052_SOLEXA_2.5_FBgn0039905	0.773	0.728
FOXK2 M08118_2.00	Homo sapiens	NNRTAAACANN	NNTGTTTAYNN	ChIP-seq Mathelier et al.(2014) MA1103.1	0.699	0.444
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.679	0.444
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.679	0.432
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.679	0.432
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.679	0.432
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.679	0.432
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.679	0.432
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.679	0.432
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.679	0.432
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.679	0.432
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.679	0.432
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.679	0.432
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.679	0.432
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.679	0.420
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.679	0.420
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.679	0.420
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.679	0.420
Foxo6 M00798_2.00	Mus musculus	NNNNHHRYDN	NHRYDDNNNN	PBM Weirauch et al.(2013) pTH3477	0.672	0.420
FOXO6 M03049_2.00	Homo sapiens	GTAAACATGTTTAC	GTAAACATGTTTAC	SELEX Jolma et al.(2013) FOXO6_1	0.672	0.420
FOXO6 M03050_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXO6_2	0.672	0.420
FOXO6 M03051_2.00	Homo sapiens	TTTCCCCACACGMC	GKCGTGTGGGGAAA	SELEX Jolma et al.(2013) FOXO6_3	0.672	0.420
Foxo3 M00797_2.00	Mus musculus	RTMAACAN	NTGTTKAY	PBM Weirauch et al.(2013) pTH3749	0.670	0.420
FOXO3 M03019_2.00	Homo sapiens	GTAAACATGTTTAC	GTAAACATGTTTAC	SELEX Jolma et al.(2013) FOXO3_1	0.670	0.420
FOXO3 M03020_2.00	Homo sapiens	GTAAACAW	WTGTTTAC	SELEX Jolma et al.(2013) FOXO3_2	0.670	0.420
FOXO3 M03021_2.00	Homo sapiens	KTTCCCCACAC	GTGTGGGGAAM	SELEX Jolma et al.(2013) FOXO3_3	0.670	0.420
FOXO3 M04813_2.00	Homo sapiens	HHCCCCACACN	NGTGTGGGGDD	SELEX Yin et al.(2017) FOXO3_eDBD_HT-SELEX	0.670	0.420
FOXO3 M09087_2.00	Homo sapiens	DGTAAACAVV	BBTGTTTACH	Misc Kulakovskiy et al.(2013) FOXO3_HUMAN.H11MO.0.B	0.670	0.420
Foxo3 M09110_2.00	Mus musculus	DGTAAACAVV	BBTGTTTACH	Misc Kulakovskiy et al.(2013) FOXO3_MOUSE.H11MO.0.B	0.670	0.420
FOXO3 M10537_2.00	Homo sapiens	WAHGTAAACAAVND	HNBTTGTTTACDWW	Transfac Matys et al.(2006) V$FOXO3_01	0.670	0.420
FOXO3 M10538_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO3A_Q1	0.670	0.420
FOXO3 M10539_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO3A_Q3	0.670	0.420
FOXO3 M04814_2.00	Homo sapiens	NHCCCCACACV	BGTGTGGGGDN	SELEX Yin et al.(2017) FOXO3_eDBD_Methyl-HT-SELEX	0.670	0.420
SPU_025010 M01988_2.00	Strongylocentrotus purpuratus	NNVNHHAYAN	NTRTDDNBNN	PBM Weirauch et al.(2014) pTH6641	0.667	0.420
Foxj3 M00160_2.00	Mus musculus	NRTAAACAHN	NDTGTTTAYN	PBM Badis et al.(2009) Foxj3_0982	0.665	0.444
Foxj3 M01981_2.00	Mus musculus	VNHHAYANN	NNTRTDDNB	PBM Weirauch et al.(2014) pTH6591	0.665	0.444
Foxj3 M03055_2.00	Mus musculus	ACGGACACAAT	ATTGTGTCCGT	SELEX Jolma et al.(2013) Foxj3_1	0.665	0.444
Foxj3 M03056_2.00	Mus musculus	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) Foxj3_2	0.665	0.444
Foxj3 M03057_2.00	Mus musculus	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2013) Foxj3_3	0.665	0.444
Foxj3 M03058_2.00	Mus musculus	RTAAACAWAAACA	TGTTTWTGTTTAY	SELEX Jolma et al.(2013) Foxj3_4	0.665	0.444
Foxj3 M09102_2.00	Mus musculus	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_MOUSE.H11MO.0.A	0.665	0.444
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCJAP00000007602	Forkhead	464	545	RPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRP
ENSCJAP00000051688	Forkhead	466	547	RPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRP

Links
Other Forkhead family TFs
Other *Callithrix jacchus* TFs

706 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

FOXP4 (Callithrix jacchus) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

706 Related TFs

FOXP4 **(Callithrix jacchus)
Forkhead**