CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Foxa3 *(Mus musculus)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	ENSMUSG00000040891	T186358_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Foxa3 M09106_2.00	Mus musculus	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_MOUSE.H11MO.0.A	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXA3 M04831_2.00	Homo sapiens	BVYTAWGTAAACAAAN	NTTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_1	0.903	1.000
FOXA3 M04832_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_2	0.903	1.000
FOXA3 M09096_2.00	Homo sapiens	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_HUMAN.H11MO.0.B	0.903	1.000
FOXA3 M10557_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3G_Q4	0.903	1.000
FOXA3 M04833_2.00	Homo sapiens	CVYTAWGTAAACAAWB	VWTTGTTTACWTARBG	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_1	0.903	1.000
FOXA3 M04834_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_2	0.903	1.000
FOXA1 M04817_2.00	Homo sapiens	NTRTKTACMYWN	NWRKGTAMAYAN	SELEX Yin et al.(2017) FOXA1_eDBD_HT-SELEX	0.854	0.953
FOXA1 M04819_2.00	Homo sapiens	BVYTAWGTAAACAAWN	NWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_1	0.854	0.953
FOXA1 M04820_2.00	Homo sapiens	HWRWRYAAATATTKACWYWR	YWRWGTMAATATTTRYWYWD	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_2	0.854	0.953
FOXA1 M08117_2.00	Homo sapiens	NNNNTRTTTACWYWD	HWRWGTAAAYANNNN	ChIP-seq Mathelier et al.(2014) MA0148.3	0.854	0.953
FOXA1 M07960_2.00	Homo sapiens	NNYWRWGYAAACANN	NNTGTTTRCWYWRNN	ChIP-seq Gerstein et al.(2012) ECC-1_FOXA1_HudsonAlpha	0.854	0.953
FOXA1 M07961_2.00	Homo sapiens	HWRWGTAAAYA	TRTTTACWYWD	ChIP-seq Gerstein et al.(2012) HepG2_FOXA1_HudsonAlpha	0.854	0.953
FOXA1 M07962_2.00	Homo sapiens	NWVWGTAAACA	TGTTTACWBWN	ChIP-seq Gerstein et al.(2012) T-47D_FOXA1_HudsonAlpha	0.854	0.953
FOXA1 M08199_2.00	Homo sapiens	BWRDGTAAACANN	NNTGTTTACHYWV	ChIP-seq Contrino et al.(2012) Mv69	0.854	0.953
FOXA1 M08028_2.00	Homo sapiens	WRWRYAAAYA	TRTTTRYWYW	ChIP-seq Chen et al.(2011) GSE15244_FoxA1	0.854	0.953
FOXA1 M09090_2.00	Homo sapiens	VHWRWGTAAACA	TGTTTACWYWDB	Misc Kulakovskiy et al.(2013) FOXA1_HUMAN.H11MO.0.A	0.854	0.953
Foxa1 M09103_2.00	Mus musculus	TRTTKACWYW	WRWGTMAAYA	Misc Kulakovskiy et al.(2013) FOXA1_MOUSE.H11MO.0.A	0.854	0.953
FOXA1 M09544_2.00	Homo sapiens	WGCCAARRYAAAYANN	NNTRTTTRYYTTGGCW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_2	0.854	0.953
FOXA1 M09543_2.00	Homo sapiens	WRWGTAAACA	TGTTTACWYW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_1	0.854	0.953
FOXA1 M09545_2.00	Homo sapiens	WRWGTAAAYA	TRTTTACWYW	Misc Heinz et al.(2010) MCF7-FOXA1_GSE26831	0.854	0.953
FOXA1 M10542_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_02	0.854	0.953
FOXA1 M10543_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_03	0.854	0.953
FOXA1 M10544_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_01	0.854	0.953
FOXA1 M10545_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3ALPHA_Q6	0.854	0.953
FOXA1 M10546_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_Q6	0.854	0.953
FOXA1 M04818_2.00	Homo sapiens	NWRDGYMAAYAW	WTRTTKRCHYWN	SELEX Yin et al.(2017) FOXA1_eDBD_Methyl-HT-SELEX	0.854	0.953
FOXA1 M04821_2.00	Homo sapiens	BVYTAWGTAAACAAWV	BWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_1	0.854	0.953
FOXA1 M04822_2.00	Homo sapiens	YTRWRYAAATATTTACWYAR	YTRWGTAAATATTTRYWYAR	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_2	0.854	0.953
Q2L6N7_PELSI M01990_2.00	Trionyx sinensis	KTRTTTACA	TGTAAAYAM	PBM Weirauch et al.(2014) pTH5334	0.841	0.895
Foxa2 M00162_2.00	Mus musculus	GTAAAYAW	WTRTTTAC	PBM Badis et al.(2009) Foxa2_2830	0.834	0.895
FOXA2 M04815_2.00	Homo sapiens	NHVNRYMAATATTKACNNDN	NHNNGTMAATATTKRYNBDN	SELEX Yin et al.(2017) FOXA2_eDBD_HT-SELEX	0.834	0.895
Foxa2 M08121_2.00	Mus musculus	TRTTTACWYWDN	NHWRWGTAAAYA	ChIP-seq Mathelier et al.(2014) MA0047.2	0.834	0.895
FOXA2 M07959_2.00	Homo sapiens	NNWRWGYAAAYANNN	NNNTRTTTRCWYWNN	ChIP-seq Gerstein et al.(2012) HepG2_FOXA2_HudsonAlpha	0.834	0.895
FOXA2 M09088_2.00	Homo sapiens	NHWRWGTAAACA	TGTTTACWYWDN	Misc Kulakovskiy et al.(2013) FOXA2_HUMAN.H11MO.0.A	0.834	0.895
Foxa2 M09104_2.00	Mus musculus	BNHTRTTKACWYW	WRWGTMAAYADNV	Misc Kulakovskiy et al.(2013) FOXA2_MOUSE.H11MO.0.A	0.834	0.895
FOXA2 M09542_2.00	Homo sapiens	WVWGTMAACANV	BNTGTTKACWBW	Misc Heinz et al.(2010) Liver-Foxa2_GSE25694	0.834	0.895
FOXA2 M10540_2.00	Homo sapiens	WAARYAAAYADKNMV	BKNMHTRTTTRYTTW	Transfac Matys et al.(2006) V$HNF3B_01	0.834	0.895
FOXA2 M10541_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3B_Q6	0.834	0.895
AAA20679 M10575_2.00	Xenopus laevis	WNWGTMAACAWWMW	WKWWTGTTKACWNW	Transfac Matys et al.(2006) V$XFD3_01	0.834	0.895
FOXA2 M04816_2.00	Homo sapiens	NWRNRYMAATATTKACWNWN	NWNWGTMAATATTKRYNYWN	SELEX Yin et al.(2017) FOXA2_eDBD_Methyl-HT-SELEX	0.834	0.895
fkh M03734_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fkh_1	0.796	0.849
fkh M03735_2.00	Drosophila melanogaster	HWASAATAAYAWT	AATRTTATTSTWD	SELEX Nitta et al.(2015) fkh_2	0.796	0.849
fkh M06473_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Mathelier et al.(2014) MA0446.1	0.796	0.849
fkh M06194_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Zhu et al.(2011) fkh_NAR_FBgn0000659	0.796	0.849
fkh M08200_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	ChIP-seq Contrino et al.(2012) Mf15	0.796	0.849
fkh M09668_2.00	Drosophila melanogaster	TRTTTRCAHAAG	CTTDTGYAAAYA	Misc Kulakovskiy et al.(2009) fkh	0.796	0.849
pha-4 M08123_2.00	Caenorhabditis elegans	WRWGYAAAYA	TRTTTRCWYW	ChIP-seq Mathelier et al.(2014) MA0546.1	0.784	0.837
pha-4 M08201_2.00	Caenorhabditis elegans	GTAAACAR	YTGTTTAC	ChIP-seq Contrino et al.(2012) Mw164	0.784	0.837
pha-4 M09548_2.00	Caenorhabditis elegans	RYAMAYAN	NTRTKTRY	Misc Heinz et al.(2010) cElegans-Embryos-PHA4_modEncode	0.784	0.837
Foxb1 M01983_2.00	Mus musculus	TRTTKAYWYW	WRWRTMAAYA	PBM Weirauch et al.(2014) pTH2808	0.677	0.767
FOXB1 M03028_2.00	Homo sapiens	GAATGACACRGCKV	BMGCYGTGTCATTC	SELEX Jolma et al.(2013) FOXB1_1	0.677	0.767
FOXB1 M03029_2.00	Homo sapiens	WRWGTMAATATTKACWYW	WRWGTMAATATTKACWYW	SELEX Jolma et al.(2013) FOXB1_2	0.677	0.767
FOXB1 M03030_2.00	Homo sapiens	WTRTTKACWTW	WAWGTMAAYAW	SELEX Jolma et al.(2013) FOXB1_3	0.677	0.767
FOXB1 M03031_2.00	Homo sapiens	NTRTTTACW	WGTAAAYAN	SELEX Jolma et al.(2013) FOXB1_4	0.677	0.767
FOXB1 M04837_2.00	Homo sapiens	NWRDGYMAATATTKRCWYWD	HWRWGYMAATATTKRCHYWN	SELEX Yin et al.(2017) FOXB1_eDBD_HT-SELEX	0.677	0.767
FOXB1 M04838_2.00	Homo sapiens	NWRNGYMAATATTKRCDYWD	HWRHGYMAATATTKRCNYWN	SELEX Yin et al.(2017) FOXB1_eDBD_Methyl-HT-SELEX	0.677	0.767
fd96Ca M03743_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fd96Ca_1	0.669	0.709
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSMUSP00000043173	Forkhead	119	208	KPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCY

Links
Other Forkhead family TFs
Other *Mus musculus* TFs

520 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
MTF1	Homo sapiens	ENSG00000188786	D	0.000
Mtf1	Mus musculus	ENSMUSG00000028890	D	0.000
Mtf1	Rattus norvegicus	ENSRNOG00000025724	I	0.000
ENSXMAG00000014614	Xiphophorus maculatus	ENSXMAG00000014614	I	0.000
MTF1	Tursiops truncatus	ENSTTRG00000013535	I	0.000
ENSTSYG00000005589	Tarsius syrichta	ENSTSYG00000005589	I	0.000
MTF1	Takifugu rubripes	ENSTRUG00000005297	I	0.000
ENSSTOG00000025276	Ictidomys tridecemlineatus	ENSSTOG00000025276	I	0.000
ENSSHAG00000014007	Sarcophilus harrisii	ENSSHAG00000014007	I	0.000
LOC100909856	Rattus norvegicus	ENSRNOG00000050240	I	0.000
Aan_R005906	Calypte anna	Aan_R005906	I	0.000
MTF1	Pteropus vampyrus	ENSPVAG00000010152	I	0.000
MTF1	Pan troglodytes	ENSPTRG00000022932	I	0.000
ENSPSIG00000005687	Pelodiscus sinensis	ENSPSIG00000005687	I	0.000
ENSPPYG00000001521	Pongo abelii	ENSPPYG00000001521	I	0.000
ENSPFOG00000013962	Poecilia formosa	ENSPFOG00000013962	I	0.000
ENSPANG00000016211	Papio anubis	ENSPANG00000016211	I	0.000
tetur01g09970	Tetranychus urticae	tetur01g09970	I	0.000
ENSONIG00000016218	Oreochromis niloticus	ENSONIG00000016218	I	0.000
Afo_R013895	Aptenodytes forsteri	Afo_R013895	I	0.000
Alligator_sinensis_CCG001426.1	Alligator sinensis	Alligator_sinensis_CCG001426.1	I	0.000
Brh_R010359	Buceros rhinoceros	Brh_R010359	I	0.000
Cmyd_10015325	Chelonia mydas	Cmyd_10015325	I	0.000
ENSBTAP00000008535-D1	Bos grunniens	ENSBTAP00000008535-D1	I	0.000
ENSP00000362127	Macaca fascicularis	ENSP00000362127	I	0.000
Gfo_R001683	Geospiza fortis	Gfo_R001683	I	0.000
Myotis_brandtii_MTF1_10028927	Myotis brandtii	Myotis_brandtii_MTF1_10028927	I	0.000
Ogr09934	Ophisaurus gracilis	Ogr09934	I	0.000
Pvit_17763	Pogona vitticeps	Pvit_17763	I	0.000
Tal_R009432	Tyto alba	Tal_R009432	I	0.000
Sakowv30031703m.g	Saccoglossus kowalevskii	Sakowv30031703m.g	I	0.000
mtf1	Xenopus tropicalis	XB-GENE-979128	I	0.000
mtf1.L	Xenopus laevis	XB-GENE-979131	I	0.000
MTF1	Gorilla gorilla	ENSGGOG00000007624	I	0.000
ENSAMEG00000001186	Ailuropoda melanoleuca	ENSAMEG00000001186	I	0.000
ENSAMXG00000001644	Astyanax mexicanus	ENSAMXG00000001644	I	0.000
ENSAPLG00000016056	Anas platyrhynchos	ENSAPLG00000016056	I	0.000
MTF1	Bos taurus	ENSBTAG00000006511	I	0.000
MTF1	Canis familiaris	ENSCAFG00000003247	I	0.000
MTF1	Callithrix jacchus	ENSCJAG00000002097	I	0.000
MTF1	Cavia porcellus	ENSCPOG00000014657	I	0.000
ENSCSAG00000001118	Chlorocebus sabaeus	ENSCSAG00000001118	I	0.000
MTF1	Dasypus novemcinctus	ENSDNOG00000009118	I	0.000
MTF1	Equus caballus	ENSECAG00000017235	I	0.000
MTF1	Echinops telfairi	ENSETEG00000003045	I	0.000
ENSFALG00000000973	Ficedula albicollis	ENSFALG00000000973	I	0.000
MTF1	Felis catus	ENSFCAG00000011020	I	0.000
MTF1	Gasterosteus aculeatus	ENSGACG00000013875	I	0.000
MTF1	Gallus gallus	ENSGALG00000001639	I	0.000
MTF1	Oryzias latipes	ENSORLG00000014411	I	0.000
ENSGMOG00000015592	Gadus morhua	ENSGMOG00000015592	I	0.000
ENSLOCG00000003310	Lepisosteus oculatus	ENSLOCG00000003310	I	0.000
MTF1	Meleagris gallopavo	ENSMGAG00000003052	I	0.000
MTF1	Microcebus murinus	ENSMICG00000011969	I	0.000
MTF1	Myotis lucifugus	ENSMLUG00000000963	I	0.000
MTF1	Macaca mulatta	ENSMMUG00000023275	I	0.000
MTF1	Monodelphis domestica	ENSMODG00000017745	I	0.000
ENSMPUG00000014538	Mustela putorius furo	ENSMPUG00000014538	I	0.000
ENSNLEG00000011682	Nomascus leucogenys	ENSNLEG00000011682	I	0.000
MTF1	Ornithorhynchus anatinus	ENSOANG00000002047	I	0.000
ENSOARG00000019896	Ovis aries	ENSOARG00000019896	I	0.000
MTF1	Oryctolagus cuniculus	ENSOCUG00000005389	I	0.000
MTF1	Otolemur garnettii	ENSOGAG00000000872	I	0.000
MTF1	Anolis carolinensis	ENSACAG00000017181	I	0.000

Foxa3 (Mus musculus) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

520 Related TFs

Foxa3 **(Mus musculus)
Forkhead**