CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TC005482 *(Tribolium castaneum)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	TC005482	T188639_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXK2 M08118_2.00	Homo sapiens	NNRTAAACANN	NNTGTTTAYNN	ChIP-seq Mathelier et al.(2014) MA1103.1	0.850	0.919
SPU_025010 M01988_2.00	Strongylocentrotus purpuratus	NNVNHHAYAN	NTRTDDNBNN	PBM Weirauch et al.(2014) pTH6641	0.831	0.919
Foxk1 M00163_2.00	Mus musculus	RWMAACAA	TTGTTKWY	PBM Badis et al.(2009) Foxk1_2323	0.821	0.907
Foxk1 M03061_2.00	Mus musculus	CGGACACAATC	GATTGTGTCCG	SELEX Jolma et al.(2013) Foxk1_1	0.821	0.907
Foxk1 M03062_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxk1_2	0.821	0.907
Foxk1 M09113_2.00	Mus musculus	NNGDMAACAVV	BBTGTTKHCNN	Misc Kulakovskiy et al.(2013) FOXK1_MOUSE.H11MO.0.A	0.821	0.907
FOXK1 M01977_2.00	Homo sapiens	NNRWMMAYAN	NTRTKKWYNN	PBM Weirauch et al.(2014) pTH6108	0.821	0.895
FOXK1 M03025_2.00	Homo sapiens	CGGACACAAT	ATTGTGTCCG	SELEX Jolma et al.(2013) FOXK1_1	0.821	0.895
FOXK1 M04825_2.00	Homo sapiens	NDNRTMAAYAN	NTRTTKAYNHN	SELEX Yin et al.(2017) FOXK1_eDBD_HT-SELEX	0.821	0.895
FOXK1 M08120_2.00	Homo sapiens	NNNGTAAACANVNN	NNBNTGTTTACNNN	ChIP-seq Mathelier et al.(2014) MA0852.2	0.821	0.895
FOXK1 M09094_2.00	Homo sapiens	VNDRDAAACA	TGTTTHYHNB	Misc Kulakovskiy et al.(2013) FOXK1_HUMAN.H11MO.0.A	0.821	0.895
FOXK1 M04826_2.00	Homo sapiens	NWYRYAAWYAD	HTRWTTRYRWN	SELEX Yin et al.(2017) FOXK1_eDBD_Methyl-HT-SELEX	0.821	0.895
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.742	0.558
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.742	0.558
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.742	0.558
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.742	0.558
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.742	0.558
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.742	0.558
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.742	0.558
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.742	0.558
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.742	0.547
FOXJ3 M03046_2.00	Homo sapiens	RTAAAVAA	TTBTTTAY	SELEX Jolma et al.(2013) FOXJ3_1	0.720	0.593
FOXJ3 M03047_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ3_2	0.720	0.593
FOXJ3 M03048_2.00	Homo sapiens	GTAAACATAAACA	TGTTTATGTTTAC	SELEX Jolma et al.(2013) FOXJ3_3	0.720	0.593
FOXJ3 M02736_2.00	Homo sapiens	AAACAATAAACA	TGTTTATTGTTT	SELEX Jolma et al.(2010) FOXJ3_dimer	0.720	0.593
FOXJ3 M02737_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2010) FOXJ3_monomer	0.720	0.593
FOXJ3 M04859_2.00	Homo sapiens	DYGTMAACAH	DTGTTKACRH	SELEX Yin et al.(2017) FOXJ3_eDBD_HT-SELEX	0.720	0.593
FOXJ3 M09098_2.00	Homo sapiens	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_HUMAN.H11MO.0.A	0.720	0.593
FOXJ3 M04860_2.00	Homo sapiens	RYGTMAACAH	DTGTTKACRY	SELEX Yin et al.(2017) FOXJ3_eDBD_Methyl-HT-SELEX	0.720	0.593
SPU_007644 M01987_2.00	Strongylocentrotus purpuratus	NNHHAYDNN	NNHRTDDNN	PBM Weirauch et al.(2014) pTH6497	0.718	0.593
Foxj3 M00160_2.00	Mus musculus	NRTAAACAHN	NDTGTTTAYN	PBM Badis et al.(2009) Foxj3_0982	0.718	0.593
Foxj3 M01981_2.00	Mus musculus	VNHHAYANN	NNTRTDDNB	PBM Weirauch et al.(2014) pTH6591	0.718	0.593
Foxj3 M03055_2.00	Mus musculus	ACGGACACAAT	ATTGTGTCCGT	SELEX Jolma et al.(2013) Foxj3_1	0.718	0.593
Foxj3 M03056_2.00	Mus musculus	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) Foxj3_2	0.718	0.593
Foxj3 M03057_2.00	Mus musculus	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2013) Foxj3_3	0.718	0.593
Foxj3 M03058_2.00	Mus musculus	RTAAACAWAAACA	TGTTTWTGTTTAY	SELEX Jolma et al.(2013) Foxj3_4	0.718	0.593
Foxj3 M09102_2.00	Mus musculus	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_MOUSE.H11MO.0.A	0.718	0.593
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.701	0.581
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.701	0.581
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.701	0.581
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.701	0.581
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.701	0.581
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.701	0.581
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.701	0.581
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.701	0.581
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.701	0.581
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.701	0.581
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.701	0.581
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.701	0.581
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.701	0.570
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.701	0.570
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.701	0.570
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.701	0.570
Foxj2 M01980_2.00	Mus musculus	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6638	0.699	0.558
Foxj2 M00790_2.00	Mus musculus	VHMAAYANN	NNTRTTKDB	PBM Weirauch et al.(2013) pTH3043	0.695	0.570
FOXJ2 M03016_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ2_1	0.695	0.570
FOXJ2 M03017_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	SELEX Jolma et al.(2013) FOXJ2_2	0.695	0.570
FOXJ2 M03018_2.00	Homo sapiens	GTAAACAWMAACA	TGTTKWTGTTTAC	SELEX Jolma et al.(2013) FOXJ2_3	0.695	0.570
FOXJ2 M04809_2.00	Homo sapiens	NTRTTTACAAYANN	NNTRTTGTAAAYAN	SELEX Yin et al.(2017) FOXJ2_eDBD_HT-SELEX	0.695	0.570
FOXJ2 M09084_2.00	Homo sapiens	WARAYAAAYA	TRTTTRTYTW	Misc Kulakovskiy et al.(2013) FOXJ2_HUMAN.H11MO.0.C	0.695	0.570
Foxj2 M09100_2.00	Mus musculus	WARAYAAAYA	TRTTTRTYTW	Misc Kulakovskiy et al.(2013) FOXJ2_MOUSE.H11MO.0.C	0.695	0.570
FOXJ2 M10527_2.00	Homo sapiens	HHNHMRAYAAAYANHNND	HNNDNTRTTTRTYKDNDD	Transfac Matys et al.(2006) V$FOXJ2_01	0.695	0.570
FOXJ2 M10528_2.00	Homo sapiens	VYMAYAATATTTKN	NMAAATATTRTKRB	Transfac Matys et al.(2006) V$FOXJ2_02	0.695	0.570
FOXJ2 M04810_2.00	Homo sapiens	NTRTTTACAAYANN	NNTRTTGTAAAYAN	SELEX Yin et al.(2017) FOXJ2_eDBD_Methyl-HT-SELEX	0.695	0.570
CBG14280 M01974_2.00	Caenorhabditis briggsae	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6734	0.683	0.558
FOXC1 M00254_2.00	Homo sapiens	RRTAAACANN	NNTGTTTAYY	PBM Barrera et al.(2016) FOXC1_I126M	0.676	0.570
FOXG1 M01978_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH5501	0.674	0.581
Foxg1 M00791_2.00	Mus musculus	NNNNMHAYAN	NTRTDKNNNN	PBM Weirauch et al.(2013) pTH2846	0.674	0.581
FOXG1 M03032_2.00	Homo sapiens	RTAAACAATDGTAAACA	TGTTTACHATTGTTTAY	SELEX Jolma et al.(2013) FOXG1_1	0.674	0.581
FOXG1 M03033_2.00	Homo sapiens	RCGGACACAATR	YATTGTGTCCGY	SELEX Jolma et al.(2013) FOXG1_2	0.674	0.581
Foxg1 M03052_2.00	Mus musculus	ATAAACAAVTGTMAACA	TGTTKACABTTGTTTAT	SELEX Jolma et al.(2013) Foxg1_1	0.674	0.581
Foxg1 M03053_2.00	Mus musculus	MHGGACACAATC	GATTGTGTCCDK	SELEX Jolma et al.(2013) Foxg1_2	0.674	0.581
Foxg1 M03054_2.00	Mus musculus	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) Foxg1_3	0.674	0.581
FOXG1 M04839_2.00	Homo sapiens	NACRYMMACAH	DTGTKKRYGTN	SELEX Yin et al.(2017) FOXG1_eDBD_HT-SELEX	0.674	0.581
FOXG1 M04840_2.00	Homo sapiens	HRCGYMAACAH	DTGTTKRCGYD	SELEX Yin et al.(2017) FOXG1_eDBD_Methyl-HT-SELEX	0.674	0.581
slp1 M01986_2.00	Drosophila melanogaster	NRTAAACANN	NNTGTTTAYN	PBM Weirauch et al.(2014) pTH6549	0.672	0.547
slp1 M03736_2.00	Drosophila melanogaster	WDYRTAAACAWW	WWTGTTTAYRHW	SELEX Nitta et al.(2015) slp1_1	0.672	0.547
slp1 M03737_2.00	Drosophila melanogaster	RTRTAAACAAAYADH	DHTRTTTGTTTAYAY	SELEX Nitta et al.(2015) slp1_2	0.672	0.547
slp1 M06474_2.00	Drosophila melanogaster	WRBVWAAACAH	DTGTTTWBVYW	B1H Mathelier et al.(2014) MA0458.1	0.672	0.547
slp1 M06195_2.00	Drosophila melanogaster	WRBVWAAACAH	DTGTTTWBVYW	B1H Zhu et al.(2011) slp1_NAR_FBgn0003430	0.672	0.547
slp1 M09669_2.00	Drosophila melanogaster	ATGTMAACAMAVV	BBTKTGTTKACAT	Misc Kulakovskiy et al.(2009) slp1	0.672	0.547
foxg1a M01985_2.00	Oryzias latipes	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH6729	0.671	0.558
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.668	0.570
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.668	0.570
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.668	0.570
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.668	0.570
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.668	0.570
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.668	0.570
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.668	0.570
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.668	0.570
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.668	0.570
FKH2 M00045_2.00	Saccharomyces cerevisiae	GTAAACAH	DTGTTTAC	PBM Badis et al.(2008) FKH2_4517	0.666	0.558
FKH2 M01542_2.00	Saccharomyces cerevisiae	NNVWMAAYAN	NTRTTKWBNN	PBM Zhu et al.(2009) Fkh2	0.666	0.558
FKH2 M07474_2.00	Saccharomyces cerevisiae	GTAAACA	TGTTTAC	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0297.1	0.666	0.558
FKH2 M08556_2.00	Saccharomyces cerevisiae	NNNNDNGTAAACAAANNNDV	BHNNNTTTGTTTACNHNNNN	Misc DeBoer et al.(2011) YNL068C_830	0.666	0.558
FOXP1 M00836_2.00	Homo sapiens	NRTMAACANN	NNTGTTKAYN	PBM Gabut et al.(2011) pEX0123	0.666	0.407
FOXP1 M00837_2.00	Homo sapiens	DGTAAACAA	TTGTTTACH	PBM Gabut et al.(2011) pEX0124	0.666	0.407
FOXP1 M01976_2.00	Homo sapiens	RTAAACAA	TTGTTTAY	PBM Weirauch et al.(2014) pTH5656	0.666	0.407
Foxp1 M00793_2.00	Mus musculus	NRTMAAYAN	NTRTTKAYN	PBM Weirauch et al.(2013) pTH3855	0.666	0.407
FOXP1 M04811_2.00	Homo sapiens	NTGTTTRYNRTNNNNNNBNAYRVWMAACAN	NTGTTKWBYRTNVNNNNNNAYNRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_HT-SELEX	0.666	0.407
FOXP1 M08115_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0481.2	0.666	0.407
FOXP1 M09086_2.00	Homo sapiens	RKAAACAVM	KBTGTTTMY	Misc Kulakovskiy et al.(2013) FOXP1_HUMAN.H11MO.0.A	0.666	0.407
FOXP1 M09541_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	Misc Heinz et al.(2010) H9-FOXP1_GSE31006	0.666	0.407
FOXP1 M10536_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXP1_01	0.666	0.407
FOXP1 M04812_2.00	Homo sapiens	NTGTTTRYBRTNNNNNNBNAYRVWMAACAH	DTGTTKWBYRTNVNNNNNNAYVRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_Methyl-HT-SELEX	0.666	0.407
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
TC005482-PA	Forkhead	271	360	KPPYSYAQLIVQAIASAPDKQLTLSGIYSYITKHYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPQSESKLIEQAF

Links
Other Forkhead family TFs
Other *Tribolium castaneum* TFs

1383 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

TC005482 (Tribolium castaneum) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1383 Related TFs

TC005482 **(Tribolium castaneum)
Forkhead**