CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

scaffold1101-EXSNAP2012.4 *(Pristionchus exspectatus)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	scaffold1101-EXSNAP2012.4	T191000_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
let-381 M00664_2.00	Caenorhabditis elegans	RTAAACAW	WTGTTTAY	PBM Narasimhan et al.(2015) pTH9057	0.800	0.663
foxe3 M01228_2.00	Xenopus tropicalis	WNNVHHMAYW	WRTKDDBNNW	PBM Lambert et al.(2019) pTH9824	0.753	0.570
FOXE1 M04845_2.00	Homo sapiens	BVYTAWRYAAACADN	NHTGTTTRYWTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_HT-SELEX	0.735	0.535
FOXE1 M04846_2.00	Homo sapiens	BVYTAARYAAACAWH	DWTGTTTRYTTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_Methyl-HT-SELEX	0.735	0.535
FOXD3 M03044_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD3_1	0.735	0.558
FOXD3 M03045_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD3_2	0.735	0.558
FOXD3 M04855_2.00	Homo sapiens	VHWRHRTAMACW	WGTKTAYDYWDB	SELEX Yin et al.(2017) FOXD3_eDBD_HT-SELEX	0.735	0.558
Foxd3 M09114_2.00	Mus musculus	DVNWRDRNAAACAVN	NBTGTTTNYHYWNBH	Misc Kulakovskiy et al.(2013) FOXD3_MOUSE.H11MO.0.C	0.735	0.558
FOXD3 M10565_2.00	Homo sapiens	RADHAAAYAWWH	DWWTRTTTDHTY	Transfac Matys et al.(2006) V$FOXD3_01	0.735	0.558
FOXD3 M10566_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HFH2_Q5	0.735	0.558
FOXD3 M04856_2.00	Homo sapiens	VYWRHRTAAACW	WGTTTAYDYWRB	SELEX Yin et al.(2017) FOXD3_eDBD_Methyl-HT-SELEX	0.735	0.558
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.730	0.535
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.730	0.535
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.730	0.535
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.730	0.535
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.730	0.535
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.730	0.535
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.730	0.535
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.730	0.535
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.730	0.535
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.730	0.535
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.730	0.535
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.730	0.535
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.730	0.523
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.730	0.523
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.730	0.523
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.730	0.523
FOXF2 M02680_2.00	Homo sapiens	BNHNSRTAAACAHN	NDTGTTTAYSNDNV	SELEX Mathelier et al.(2014) MA0030.1	0.724	0.605
FOXF2 M10548_2.00	Homo sapiens	BNHNBRTAAACAHNVN	NBNDTGTTTAYVNDNV	Transfac Matys et al.(2006) V$FREAC2_01	0.724	0.605
FOXF1 M10529_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL5_Q3	0.719	0.605
FOXF1 M10530_2.00	Homo sapiens	YRHATAAACAHNB	VNDTGTTTATDYR	Transfac Matys et al.(2006) V$HFH8_01	0.719	0.605
fd59A M03739_2.00	Drosophila melanogaster	HWAWRTAAACAWW	WWTGTTTAYWTWD	SELEX Nitta et al.(2015) fd59A_1	0.717	0.535
fd59A M03740_2.00	Drosophila melanogaster	WWAVAATAACAHN	NDTGTTATTBTWW	SELEX Nitta et al.(2015) fd59A_2	0.717	0.535
fd59A M03741_2.00	Drosophila melanogaster	YWRWRTAAAYAHH	DDTRTTTAYWYWR	SELEX Nitta et al.(2015) fd59A_3	0.717	0.535
fd59A M03742_2.00	Drosophila melanogaster	MWACAAYAAYAHW	WDTRTTRTTGTWK	SELEX Nitta et al.(2015) fd59A_4	0.717	0.535
FOXL1 M03034_2.00	Homo sapiens	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) FOXL1_1	0.711	0.547
FOXL1 M03035_2.00	Homo sapiens	NRTAAAYAAAYAN	NTRTTTRTTTAYN	SELEX Jolma et al.(2013) FOXL1_2	0.711	0.547
FOXL1 M10558_2.00	Homo sapiens	DHNVHATAAAYAHNNN	NNNDTRTTTATDBNDH	Transfac Matys et al.(2006) V$FREAC7_01	0.711	0.547
Foxl1 M00164_2.00	Mus musculus	NNNRTMAAYA	TRTTKAYNNN	PBM Badis et al.(2009) Foxl1_2809	0.711	0.535
FOXD4L4 M10564_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXD4L4_01	0.705	0.535
FOXC1 M00254_2.00	Homo sapiens	RRTAAACANN	NNTGTTTAYY	PBM Barrera et al.(2016) FOXC1_I126M	0.705	0.523
FOXD2 M03042_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD2_1	0.702	0.547
FOXD2 M03043_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD2_2	0.702	0.547
FOXD2 M04851_2.00	Homo sapiens	HWASAATAAYAWWN	NWWTRTTATTSTWD	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_1	0.702	0.547
FOXD2 M04852_2.00	Homo sapiens	VYWANRTAAAYAH	DTRTTTAYNTWRB	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_2	0.702	0.547
FOXD1 M02681_2.00	Homo sapiens	GTAAACAD	HTGTTTAC	SELEX Mathelier et al.(2014) MA0031.1	0.702	0.547
Foxd1 M10570_2.00	Mus musculus	SYWAWGTAAACADHVN	NBDHTGTTTACWTWRS	Transfac Matys et al.(2006) V$FREAC4_01	0.702	0.547
FOXD1 M10567_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FREAC4_02	0.702	0.547
FOXD2 M04853_2.00	Homo sapiens	HWACAATAACRWWN	NWWYGTTATTGTWD	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_1	0.702	0.547
FOXD2 M04854_2.00	Homo sapiens	RYTRNGTMAACRD	HYGTTKACNYARY	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_2	0.702	0.547
croc M03744_2.00	Drosophila melanogaster	WRYGTMAACAH	DTGTTKACRYW	SELEX Nitta et al.(2015) croc_1	0.699	0.523
croc M10571_2.00	Drosophila melanogaster	HWNARTAAATAKNNNV	BNNNMTATTTAYYNWD	Transfac Matys et al.(2006) I$CROC_01	0.699	0.523
Gm5294 M01984_2.00	Mus musculus	NNKRTAAACANN	NNTGTTTAYMNN	PBM Weirauch et al.(2014) pTH3802	0.698	0.488
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.697	0.523
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.697	0.523
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.697	0.523
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.697	0.523
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.697	0.523
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.697	0.523
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.697	0.523
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.697	0.523
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.697	0.523
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.696	0.500
bin M03752_2.00	Drosophila melanogaster	HTAATGTAAACAAW	WTTGTTTACATTAD	SELEX Nitta et al.(2015) bin_1	0.684	0.581
bin M06199_2.00	Drosophila melanogaster	TAAACARVGA	TCBYTGTTTA	B1H Zhu et al.(2011) bin_FlyReg_FBgn0045759	0.684	0.581
bin M06200_2.00	Drosophila melanogaster	RTAAACA	TGTTTAY	B1H Zhu et al.(2011) bin_SANGER_5_FBgn0045759	0.684	0.581
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.666	0.512
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.666	0.512
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.666	0.512
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.666	0.512
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.666	0.512
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.666	0.512
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.666	0.512
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.666	0.512
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.666	0.512
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
scaffold1101-EXSNAP2012.4	Forkhead	69	159	KPPYSYIALIALAIKDQPDGKATLAEIYDFLQKHWDFFRGEYVGWRNSIRHNLSLNDCFVKLGKEPGERGRKGHKWMLSPNSEYQFDEGSY

Links
Other Forkhead family TFs
Other *Pristionchus exspectatus* TFs

1031 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
HPLM_0001120601	Haemonchus placei	HPLM_0001120601	N	0.000
MDOA007303	Musca domestica	MDOA007303	N	0.000
ALUE_0000523001	Ascaris lumbricoides	ALUE_0000523001	N	0.000
ANCCAN_02501	Ancylostoma caninum	ANCCAN_02501	N	0.000
ANCCEY_04498	Ancylostoma ceylanicum	ANCCEY_04498	N	0.000
ANCDUO_01800	Ancylostoma duodenale	ANCDUO_01800	N	0.000
ASIM_0001023101	Anisakis simplex	ASIM_0001023101	N	0.000
augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0	N	0.000
BTMF_0000819101	Brugia timori	BTMF_0000819101	N	0.000
BXY_0681200	Bursaphelenchus xylophilus	BXY_0681200	N	0.000
CGOC_0000560601	Cylicostephanus goldi	CGOC_0000560601	N	0.000
D918_05751	Trichuris suis	D918_05751	N	0.000
DICVIV_09521	Dictyocaulus viviparus	DICVIV_09521	N	0.000
EEL_0000436501	Elaeophora elaphi	EEL_0000436501	N	0.000
Hba_16068	Heterorhabditis bacteriophora	Hba_16068	N	0.000
HPBE_0001925501	Heligmosomoides bakeri	HPBE_0001925501	N	0.000
BGLB003107	Biomphalaria glabrata	BGLB003107	N	0.000
L893_g14196	Steinernema glaseri	L893_g14196	N	0.000
L898_g11712	Steinernema monticolum	L898_g11712	N	0.000
nAv.1.0.1.g03640	Acanthocheilonema viteae	nAv.1.0.1.g03640	N	0.000
nDi.2.2.2.g01975	Dirofilaria immitis	nDi.2.2.2.g01975	N	0.000
nLs.2.1.2.g02280	Litomosoides sigmodontis	nLs.2.1.2.g02280	N	0.000
nOo.2.0.1.g06917	Onchocerca ochengi	nOo.2.0.1.g06917	N	0.000
nOo.2.0.1.g07994	Onchocerca ochengi	nOo.2.0.1.g07994	N	0.000
OFLC_0001322801	Onchocerca flexuosa	OFLC_0001322801	N	0.000
PEQ_0000886501	Parascaris equorum	PEQ_0000886501	N	0.000
scaffold58-EXSNAP2012.11	Pristionchus exspectatus	scaffold58-EXSNAP2012.11	N	0.000
SVE_1689300	Strongyloides venezuelensis	SVE_1689300	N	0.000
TCLT_0000816701	Thelazia callipaeda	TCLT_0000816701	N	0.000
TCNE_0000027001	Toxocara canis	TCNE_0000027001	N	0.000
TTRE_0000249801	Trichuris trichiura	TTRE_0000249801	N	0.000
HelroG184094	Helobdella robusta	HelroG184094	N	0.000
CpipJ_CPIJ018552	Culex pipiens	CpipJ_CPIJ018552	N	0.000
WUBG_04923	Wuchereria bancrofti	WUBG_04923	N	0.000
AAEL003558	Aedes aegypti	AAEL003558	N	0.000
Bm12962	Brugia malayi	Bm12962	N	0.000
CapteG215623	Capitella teleta	CapteG215623	N	0.000
CBG25174	Caenorhabditis briggsae	CBG25174	N	0.000
CBN28364	Caenorhabditis brenneri	CBN28364	N	0.000
CBN28537	Caenorhabditis brenneri	CBN28537	N	0.000
CGI_10012805	Crassostrea gigas	CGI_10012805	N	0.000
CJA30884	Caenorhabditis japonica	CJA30884	N	0.000
CJA40030	Caenorhabditis japonica	CJA40030	N	0.000
CPIJ006385	Culex quinquefasciatus	CPIJ006385	N	0.000
CPIJ018552	Culex quinquefasciatus	CPIJ018552	N	0.000
EFV52452	Trichinella spiralis	EFV52452	N	0.000
GM26798	Drosophila sechellia	FBgn0181651	N	0.000
CpipJ_CPIJ006385	Culex pipiens	CpipJ_CPIJ006385	N	0.000
LOAG_18302	Loa loa	LOAG_18302	N	0.000
MESCA003372	Megaselia scalaris	MESCA003372	N	0.000
PPA09748	Pristionchus pacificus	PPA09748	N	0.000
RPRC014602	Rhodnius prolixus	RPRC014602	N	0.000
WBGene00237282	Onchocerca volvulus	WBGene00237282	N	0.000
LCUP009926	Lucilia cuprina	LCUP009926	N	0.000
AARA001118	Anopheles arabiensis	AARA001118	N	0.000
AATE005200	Anopheles atroparvus	AATE005200	N	0.000
ACHR008953	Anopheles christyi	ACHR008953	N	0.000
ACOM027781	Anopheles coluzzii	ACOM027781	N	0.000
AMAM012119	Anopheles maculatus	AMAM012119	N	0.000
AMEC001472	Anopheles melas	AMEC001472	N	0.000
AMEM006409	Anopheles merus	AMEM006409	N	0.000
AQUA008305	Anopheles quadriannulatus	AQUA008305	N	0.000

scaffold1101-EXSNAP2012.4 (Pristionchus exspectatus) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1031 Related TFs

scaffold1101-EXSNAP2012.4 **(Pristionchus exspectatus)
Forkhead**