AMTR_s00004p00074220 (Amborella trichopoda)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 AMTR_s00004p00074220 T191671_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.848 0.833
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.848 0.833
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.848 0.833
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.838 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.838 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.838 0.806
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.833 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.832 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.832 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.832 0.778
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.832 0.778
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.830 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.830 0.806
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.819 0.750
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.819 0.750
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.819 0.750
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.819 0.750
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM93539 GATA 213 248

Links

Other GATA family TFs
Other Amborella trichopoda TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Hey Drosophila melanogaster FBgn0027788 D
AEPI009203 Anopheles epiroticus AEPI009203 I
GK21562 Drosophila willistoni FBgn0223554 I
GE23399 Drosophila yakuba FBgn0240591 I
LotgiG171867 Lottia gigantea LotgiG171867 I
LCUP005888 Lucilia cuprina LCUP005888 I
AALB005115 Anopheles albimanus AALB005115 I
AARA008036 Anopheles arabiensis AARA008036 I
AATE001925 Anopheles atroparvus AATE001925 I
ACOM025686 Anopheles coluzzii ACOM025686 I
ACUA018337 Anopheles culicifacies ACUA018337 I
ADIR007247 Anopheles dirus ADIR007247 I
GJ20236 Drosophila virilis FBgn0207376 I
AFAF013289 Anopheles farauti AFAF013289 I
AFUN009268 Anopheles funestus AFUN009268 I
AMEC000625 Anopheles melas AMEC000625 I
AMEM007511 Anopheles merus AMEM007511 I
AMIN010454 Anopheles minimus AMIN010454 I
AQUA004460 Anopheles quadriannulatus AQUA004460 I
ASIS014948 Anopheles sinensis ASIS014948 I
ASTEI01378 Anopheles stephensi ASTEI01378 I
LLOJ002069 Lutzomyia longipalpis LLOJ002069 I
MDOA011625 Musca domestica MDOA011625 I
ENSXMAG00000014241 Xiphophorus maculatus ENSXMAG00000014241 I
AAEL001428 Aedes aegypti AAEL001428 I
ADAC002255 Anopheles darlingi ADAC002255 I
AGAP007450 Anopheles gambiae AGAP007450 I
CPIJ017595 Culex quinquefasciatus CPIJ017595 I
HEYL Felis catus ENSFCAG00000010963 I
ENSONIG00000002623 Oreochromis niloticus ENSONIG00000002623 I
hey1 Oryzias latipes ENSORLG00000012953 I
ENSPFOG00000014160 Poecilia formosa ENSPFOG00000014160 I
ENSXMAG00000003593 Xiphophorus maculatus ENSXMAG00000003593 I
CpipJ_CPIJ017595 Culex pipiens CpipJ_CPIJ017595 I
GA10830 Drosophila pseudoobscura FBgn0070886 I
GF11221 Drosophila ananassae FBgn0088261 I
GG10686 Drosophila erecta FBgn0102992 I
GH19996 Drosophila grimshawi FBgn0127460 I
GI19174 Drosophila mojavensis FBgn0141913 I
GL10603 Drosophila persimilis FBgn0148213 I
GM20733 Drosophila sechellia FBgn0175614 I
GD10199 Drosophila simulans FBgn0181974 I
GD10200 Drosophila simulans FBgn0181975 I
DAPPUDRAFT_347250 Daphnia pulex DAPPUDRAFT_347250 N
Sjc_0014730 Schistosoma japonicum Sjc_0014730 N