Bra012080 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra012080 T191951_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.836 0.944
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.836 0.944
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.917
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012080.1-P GATA 108 143

Links

Other GATA family TFs
Other Brassica rapa TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Hivep2 Mus musculus ENSMUSG00000015501 I 0.000
HIVEP2 Sorex araneus ENSSARG00000005468 N 0.000
LLOJ003078 Lutzomyia longipalpis LLOJ003078 N 0.000
LLOJ000479 Lutzomyia longipalpis LLOJ000479 N 0.000
Tal_R002635 Tyto alba Tal_R002635 N 0.000
Gfo_R008964 Geospiza fortis Gfo_R008964 N 0.000
Cflo_09125--XP_001121731.1_APIME Camponotus floridanus Cflo_09125--XP_001121731.1_APIME N 0.000
Brh_R000375 Buceros rhinoceros Brh_R000375 N 0.000
Alligator_sinensis_CCG009304.1 Alligator sinensis Alligator_sinensis_CCG009304.1 N 0.000
NV31766 Nasonia vitripennis NV31766 N 0.000
GJ17675 Drosophila virilis FBgn0204844 N 0.000
ENSXMAG00000015773 Xiphophorus maculatus ENSXMAG00000015773 N 0.000
ENSTSYG00000014718 Tarsius syrichta ENSTSYG00000014718 N 0.000
ENSTRUG00000010896 Takifugu rubripes ENSTRUG00000010896 N 0.000
HIVEP3 Taeniopygia guttata ENSTGUG00000017331 N 0.000
ENSSTOG00000014879 Ictidomys tridecemlineatus ENSSTOG00000014879 N 0.000
ENSACAG00000008187 Anolis carolinensis ENSACAG00000008187 N 0.000
ENSSARG00000001213 Sorex araneus ENSSARG00000001213 N 0.000
ENSPFOG00000003107 Poecilia formosa ENSPFOG00000003107 N 0.000
HIVEP3 Procavia capensis ENSPCAG00000009633 N 0.000
HIVEP1 Procavia capensis ENSPCAG00000007961 N 0.000
HIVEP3 Ochotona princeps ENSOPRG00000003135 N 0.000
ENSGMOG00000006318 Gadus morhua ENSGMOG00000006318 N 0.000
ENSGMOG00000005293 Gadus morhua ENSGMOG00000005293 N 0.000
HIVEP2 Echinops telfairi ENSETEG00000018336 N 0.000
Hivep3 Dipodomys ordii ENSDORG00000006074 N 0.000
HIVEP3 Callithrix jacchus ENSCJAG00000015848 N 0.000
HIVEP3 Choloepus hoffmanni ENSCHOG00000012407 N 0.000
ENSAMXG00000000714 Astyanax mexicanus ENSAMXG00000000714 N 0.000