Cagra.3784s0001 (Capsella grandiflora)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cagra.3784s0001 T196436_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.862 0.944
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.834 0.861
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.834 0.861
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.834 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.834 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.832 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.832 0.750
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.832 0.722
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.832 0.722
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.823 0.778
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.823 0.778
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.823 0.778
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.750
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.823 0.750
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.819 0.722
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.819 0.722
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.819 0.722
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3784s0001.1.p GATA 170 205

Links

Other GATA family TFs
Other Capsella grandiflora TFs

607 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M404DRAFT_15942 Pisolithus tinctorius M404DRAFT_15942 N
fgenesh1_pg.C_scaffold_5000072 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_5000072 N
SERLA73DRAFT_117697 Serpula lacrymans SERLA73DRAFT_117697 N
SCLCIDRAFT_114536 Scleroderma citrinum SCLCIDRAFT_114536 N
SCHCODRAFT_73210 Schizophyllum commune SCHCODRAFT_73210 N
SCHCODRAFT_257495 Schizophyllum commune SCHCODRAFT_257495 N
POSPLDRAFT_100778 Postia placenta POSPLDRAFT_100778 N
PLEOSDRAFT_1073145 Pleurotus ostreatus PLEOSDRAFT_1073145 N
PISMIDRAFT_672167 Pisolithus microcarpus PISMIDRAFT_672167 N
PILCRDRAFT_810475 Piloderma croceum PILCRDRAFT_810475 N
PHLGIDRAFT_78080 Phlebiopsis gigantea PHLGIDRAFT_78080 N
PHACADRAFT_254069 Phanerochaete carnosa PHACADRAFT_254069 N
PAXRUDRAFT_144589 Paxillus rubicundulus PAXRUDRAFT_144589 N
Moror_4655 Moniliophthora roreri Moror_4655 N
M413DRAFT_439142 Hebeloma cylindrosporum M413DRAFT_439142 N
M413DRAFT_18957 Hebeloma cylindrosporum M413DRAFT_18957 N
CC1G_09834 Coprinopsis cinerea CC1G_09834 N
M378DRAFT_75687 Amanita muscaria M378DRAFT_75687 N
LACBIDRAFT_317073 Laccaria bicolor LACBIDRAFT_317073 N
LACBIDRAFT_301157 Laccaria bicolor LACBIDRAFT_301157 N
K443DRAFT_129361 Laccaria amethystina K443DRAFT_129361 N
HYDPIDRAFT_99795 Hydnomerulius pinastri HYDPIDRAFT_99795 N
HETIRDRAFT_479833 Heterobasidion irregulare HETIRDRAFT_479833 N
HETIRDRAFT_423957 Heterobasidion irregulare HETIRDRAFT_423957 N
GYMLUDRAFT_50070 Gymnopus luxurians GYMLUDRAFT_50070 N
GLOTRDRAFT_65551 Gloeophyllum trabeum GLOTRDRAFT_65551 N
GALMADRAFT_246384 Galerina marginata GALMADRAFT_246384 N
FOMPIDRAFT_1116385 Fomitopsis pinicola FOMPIDRAFT_1116385 N
FIBRA_07605 Fibroporia radiculosa FIBRA_07605 N
DICSQDRAFT_64693 Dichomitus squalens DICSQDRAFT_64693 N
CY34DRAFT_772225 Suillus luteus CY34DRAFT_772225 N
CERSUDRAFT_137619 Ceriporiopsis subvermispora CERSUDRAFT_137619 N