Ciclev10006161m.g (Citrus clementina)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Ciclev10006161m.g T196481_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.838 0.889
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.818 0.889
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.818 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10006161m GATA 36 71

Links

Other GATA family TFs
Other Citrus clementina TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA003560 Oryza indica BGIOSGA003560 N 0.000
LPERR01G14420 Leersia perrieri LPERR01G14420 N 0.000
OBART01G16010 Oryza barthii OBART01G16010 N 0.000
OGLUM01G18710 Oryza glumaepatula OGLUM01G18710 N 0.000
ONIVA01G18160 Oryza nivara ONIVA01G18160 N 0.000
OPUNC01G16830 Oryza punctata OPUNC01G16830 N 0.000
ORGLA01G0399300 Oryza glaberrima ORGLA01G0399300 N 0.000
ORUFI01G17760 Oryza rufipogon ORUFI01G17760 N 0.000