Ciclev10027306m.g (Citrus clementina)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Ciclev10027306m.g T196495_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.851 0.944
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.851 0.889
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.851 0.889
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.851 0.861
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.815 0.861
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027306m GATA 215 252

Links

Other GATA family TFs
Other Citrus clementina TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MCYG_06232 Microsporum canis MCYG_06232 N
ARB_00470 Arthroderma benhamiae ARB_00470 N
EURHEDRAFT_406252 Aspergillus ruber EURHEDRAFT_406252 N
H101_05082 Trichophyton interdigitale H101_05082 N
H102_00291 Trichophyton rubrum H102_00291 N
H105_00285 Trichophyton soudanense H105_00285 N
MCYG_06232 Arthroderma otae MCYG_06232 N
MGYG_06660 Microsporum gypseum MGYG_06660 N
TEQG_05420 Trichophyton equinum TEQG_05420 N
TESG_07757 Trichophyton tonsurans TESG_07757 N