Pavir.Ab02582 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.Ab02582 T196726_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.856 0.944
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.856 0.944
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.847 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.847 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.847 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.847 0.806
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.837 0.806
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.778
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.832 0.778
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.832 0.778
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.832 0.778
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.832 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.828 0.917
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.722
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.722
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02582.1.p GATA 305 340

Links

Other GATA family TFs
Other Panicum virgatum TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FOXN1 Homo sapiens ENSG00000109101 D
Foxn1 Mus musculus ENSMUSG00000002057 D
Foxn4 Mus musculus ENSMUSG00000042002 D
jumu Drosophila melanogaster FBgn0015396 D
CpipJ_CPIJ001711 Culex pipiens CpipJ_CPIJ001711 I
AAEL018187 Aedes aegypti AAEL018187 I
ACYPI21591 Acyrthosiphon pisum ACYPI21591 I
AGAP003940 Anopheles gambiae AGAP003940 I
BGIBMGA000445 Bombyx mori BGIBMGA000445 I
CPIJ001711 Culex quinquefasciatus CPIJ001711 I
ENSACAG00000011719 Anolis carolinensis ENSACAG00000011719 I
ENSACAG00000012187 Anolis carolinensis ENSACAG00000012187 I
ENSAMEG00000004934 Ailuropoda melanoleuca ENSAMEG00000004934 I
ENSAMEG00000016548 Ailuropoda melanoleuca ENSAMEG00000016548 I
ENSAMXG00000006838 Astyanax mexicanus ENSAMXG00000006838 I
ENSAMXG00000017753 Astyanax mexicanus ENSAMXG00000017753 I
ENSAPLG00000002586 Anas platyrhynchos ENSAPLG00000002586 I
ENSAPLG00000014618 Anas platyrhynchos ENSAPLG00000014618 I
FOXN4 Bos taurus ENSBTAG00000010847 I
FOXN1 Bos taurus ENSBTAG00000013095 I
FOXN4 Canis familiaris ENSCAFG00000010915 I
FOXN1 Canis familiaris ENSCAFG00000018709 I
FOXN4 Callithrix jacchus ENSCJAG00000010010 I
FOXN1 Callithrix jacchus ENSCJAG00000012705 I
FOXN4 Cavia porcellus ENSCPOG00000000942 I
FOXN1 Cavia porcellus ENSCPOG00000009810 I
ENSCSAG00000002781 Chlorocebus sabaeus ENSCSAG00000002781 I
ENSCSAG00000007275 Chlorocebus sabaeus ENSCSAG00000007275 I
foxn4 Danio rerio ENSDARG00000010591 I
foxn1 Danio rerio ENSDARG00000011879 I
FOXN1 Dasypus novemcinctus ENSDNOG00000006144 I
FOXN4 Dasypus novemcinctus ENSDNOG00000015606 I
Foxn1 Dipodomys ordii ENSDORG00000015116 I
FOXN1 Equus caballus ENSECAG00000010691 I
FOXN1 Erinaceus europaeus ENSEEUG00000006629 I
FOXN1 Echinops telfairi ENSETEG00000015002 I
ENSFALG00000006460 Ficedula albicollis ENSFALG00000006460 I
ENSFALG00000008767 Ficedula albicollis ENSFALG00000008767 I
FOXN4 Felis catus ENSFCAG00000003124 I
FOXN1 Felis catus ENSFCAG00000008268 I
FOXN4 Homo sapiens ENSG00000139445 I
foxn1 Gasterosteus aculeatus ENSGACG00000008619 I
foxn4 Gasterosteus aculeatus ENSGACG00000009215 I
ENSGALG00000003654 Gallus gallus ENSGALG00000003654 I
FoxN4 Gallus gallus ENSGALG00000005062 I
FOXN4 Gorilla gorilla ENSGGOG00000009323 I
FOXN1 Gorilla gorilla ENSGGOG00000009682 I
ENSGMOG00000002294 Gadus morhua ENSGMOG00000002294 I
ENSGMOG00000012022 Gadus morhua ENSGMOG00000012022 I
ENSLACG00000011453 Latimeria chalumnae ENSLACG00000011453 I
FOXN1 Loxodonta africana ENSLAFG00000014501 I
ENSLAFG00000031464 Loxodonta africana ENSLAFG00000031464 I
ENSLOCG00000000236 Lepisosteus oculatus ENSLOCG00000000236 I
ENSLOCG00000004428 Lepisosteus oculatus ENSLOCG00000004428 I
ENSMEUG00000015975 Macropus eugenii ENSMEUG00000015975 I
FOXN1 Meleagris gallopavo ENSMGAG00000005734 I
FOXN4 Meleagris gallopavo ENSMGAG00000006116 I
FOXN1 Microcebus murinus ENSMICG00000016795 I
FOXN1 Myotis lucifugus ENSMLUG00000012353 I
ENSMMUG00000020375 Macaca mulatta ENSMMUG00000020375 I
FOXN1 Macaca mulatta ENSMMUG00000021975 I
FOXN1 Monodelphis domestica ENSMODG00000019251 I
ENSMPUG00000003606 Mustela putorius furo ENSMPUG00000003606 I
ENSMPUG00000014265 Mustela putorius furo ENSMPUG00000014265 I
ENSNLEG00000001602 Nomascus leucogenys ENSNLEG00000001602 I
ENSNLEG00000002304 Nomascus leucogenys ENSNLEG00000002304 I
FOXN4 Ornithorhynchus anatinus ENSOANG00000008810 I
ENSOANG00000014185 Ornithorhynchus anatinus ENSOANG00000014185 I
ENSOARG00000016041 Ovis aries ENSOARG00000016041 I
ENSOARG00000018638 Ovis aries ENSOARG00000018638 I
FOXN4 Oryctolagus cuniculus ENSOCUG00000005185 I
FOXN1 Oryctolagus cuniculus ENSOCUG00000013779 I
FOXN1 Otolemur garnettii ENSOGAG00000007093 I
FOXN4 Otolemur garnettii ENSOGAG00000007455 I
ENSONIG00000008179 Oreochromis niloticus ENSONIG00000008179 I
ENSONIG00000013504 Oreochromis niloticus ENSONIG00000013504 I
FOXN4 Ochotona princeps ENSOPRG00000006537 I
FOXN1 Ochotona princeps ENSOPRG00000012389 I
FOXN4 Oryzias latipes ENSORLG00000007587 I
ENSORLG00000008113 Oryzias latipes ENSORLG00000008113 I
ENSPANG00000019523 Papio anubis ENSPANG00000019523 I
ENSPANG00000023451 Papio anubis ENSPANG00000023451 I
FOXN1 Procavia capensis ENSPCAG00000010796 I
ENSPFOG00000006570 Poecilia formosa ENSPFOG00000006570 I
ENSPFOG00000013538 Poecilia formosa ENSPFOG00000013538 I
ENSPMAG00000004307 Petromyzon marinus ENSPMAG00000004307 I
ENSPPYG00000004931 Pongo abelii ENSPPYG00000004931 I
ENSPPYG00000008096 Pongo abelii ENSPPYG00000008096 I
ENSPSIG00000004744 Pelodiscus sinensis ENSPSIG00000004744 I
ENSPSIG00000009226 Pelodiscus sinensis ENSPSIG00000009226 I
FOXN4 Pan troglodytes ENSPTRG00000005421 I
FOXN1 Pan troglodytes ENSPTRG00000008920 I
FOXN1 Pteropus vampyrus ENSPVAG00000002892 I
FOXN4 Pteropus vampyrus ENSPVAG00000007463 I
Foxn4 Rattus norvegicus ENSRNOG00000000691 I
Foxn1 Rattus norvegicus ENSRNOG00000010870 I
ENSSARG00000006773 Sorex araneus ENSSARG00000006773 I
ENSSHAG00000013650 Sarcophilus harrisii ENSSHAG00000013650 I
ENSSSCG00000009936 Sus scrofa ENSSSCG00000009936 I
ENSSSCG00000022921 Sus scrofa ENSSSCG00000022921 I
ENSSTOG00000028800 Ictidomys tridecemlineatus ENSSTOG00000028800 I
ENSSTOG00000028981 Ictidomys tridecemlineatus ENSSTOG00000028981 I
FOXN4 Tupaia belangeri ENSTBEG00000005233 I
FOXN1 Tupaia belangeri ENSTBEG00000007940 I
FOXN1 Taeniopygia guttata ENSTGUG00000005999 I
FOXN4 Taeniopygia guttata ENSTGUG00000007235 I
foxn4 Tetraodon nigroviridis ENSTNIG00000015894 I
foxn4 Takifugu rubripes ENSTRUG00000015456 I
FOXN1 Tursiops truncatus ENSTTRG00000004014 I
FOXN4 Tursiops truncatus ENSTTRG00000006397 I
ENSXMAG00000007879 Xiphophorus maculatus ENSXMAG00000007879 I
ENSXMAG00000011786 Xiphophorus maculatus ENSXMAG00000011786 I
GA17887 Drosophila pseudoobscura FBgn0077896 I
GF17528 Drosophila ananassae FBgn0094546 I
GG17529 Drosophila erecta FBgn0109754 I
GH19127 Drosophila grimshawi FBgn0126594 I
GI23584 Drosophila mojavensis FBgn0146310 I
GM23879 Drosophila sechellia FBgn0178744 I
GD18690 Drosophila simulans FBgn0190211 I
GJ23559 Drosophila virilis FBgn0210656 I
GK11545 Drosophila willistoni FBgn0213556 I
GE26032 Drosophila yakuba FBgn0243075 I
GA25156 Drosophila pseudoobscura FBgn0246538 I
GB41890 Apis mellifera GB41890 I
ISCW008179 Ixodes scapularis ISCW008179 I
KGM_21935 Danaus plexippus KGM_21935 I
L798_10143 Zootermopsis nevadensis L798_10143 I
LotgiG77849 Lottia gigantea LotgiG77849 I
NEMVEDRAFT_v1g121754 Nematostella vectensis NEMVEDRAFT_v1g121754 I
PHUM047550 Pediculus humanus PHUM047550 I
RPRC003475 Rhodnius prolixus RPRC003475 I
SINV24088 Solenopsis invicta SINV24088 I
SMAR013946 Strigamia maritima SMAR013946 I
SPU_002320 Strongylocentrotus purpuratus SPU_002320 I
TC012532 Tribolium castaneum TC012532 I
YQE_08440 Dendroctonus ponderosae YQE_08440 I
Aan_R003515 Calypte anna Aan_R003515 I
Aan_R010366 Calypte anna Aan_R010366 I
Afo_R000794 Aptenodytes forsteri Afo_R000794 I
Afo_R013485 Aptenodytes forsteri Afo_R013485 I
Alligator_sinensis_CCG002668.1 Alligator sinensis Alligator_sinensis_CCG002668.1 I
Alligator_sinensis_CCG016523.1 Alligator sinensis Alligator_sinensis_CCG016523.1 I
Brh_R000146 Buceros rhinoceros Brh_R000146 I
Brh_R003679 Buceros rhinoceros Brh_R003679 I
Cflo_09362--XP_394749.3_APIME Camponotus floridanus Cflo_09362--XP_394749.3_APIME I
Cmyd_10015695 Chelonia mydas Cmyd_10015695 I
ENSBTAP00000014397-D1 Bos grunniens ENSBTAP00000014397-D1 I
ENSBTAP00000017410-D1 Bos grunniens ENSBTAP00000017410-D1 I
ENSP00000226247 Macaca fascicularis ENSP00000226247 I
ENSP00000299162 Macaca fascicularis ENSP00000299162 I
Gfo_R003176 Geospiza fortis Gfo_R003176 I
Gfo_R011440 Geospiza fortis Gfo_R011440 I
Myotis_brandtii_Foxn1_10015981 Myotis brandtii Myotis_brandtii_Foxn1_10015981 I
Myotis_brandtii_FOXN4_10027419 Myotis brandtii Myotis_brandtii_FOXN4_10027419 I
Ogr03484 Ophisaurus gracilis Ogr03484 I
Ogr14394 Ophisaurus gracilis Ogr14394 I
Pvit_02436 Pogona vitticeps Pvit_02436 I
Tal_R000657 Tyto alba Tal_R000657 I
Tal_R011069 Tyto alba Tal_R011069 I
estExt_fgenesh2_pg.C_1860025 Branchiostoma floridae estExt_fgenesh2_pg.C_1860025 I
fgenesh2_pg.scaffold_129000050 Branchiostoma floridae fgenesh2_pg.scaffold_129000050 I
Sakowv30034418m.g Saccoglossus kowalevskii Sakowv30034418m.g I
CLEC011741 Cimex lectularius CLEC011741 I
HHAL008872-PA Halyomorpha halys HHAL008872-PA I
LCUP000947 Lucilia cuprina LCUP000947 I
LDEC004155 Leptinotarsa decemlineata LDEC004155 I
foxn4 Xenopus tropicalis XB-GENE-981086 I
foxn4.S Xenopus laevis XB-GENE-981090 I
XP_002937190 Xenopus tropicalis XP_002937190 I
XP_002166457.1 Hydra magnipapillata XP_002166457.1 I
AALB009566 Anopheles albimanus AALB009566 I
AARA009846 Anopheles arabiensis AARA009846 I
AATE005421 Anopheles atroparvus AATE005421 I
ACUA002164 Anopheles culicifacies ACUA002164 I
ADIR003350 Anopheles dirus ADIR003350 I
AEPI007299 Anopheles epiroticus AEPI007299 I
AFAF001586 Anopheles farauti AFAF001586 I
AFUN011236 Anopheles funestus AFUN011236 I
AMAM019487 Anopheles maculatus AMAM019487 I
AMIN000296 Anopheles minimus AMIN000296 I
AQUA009136 Anopheles quadriannulatus AQUA009136 I
ASIS014250 Anopheles sinensis ASIS014250 I
ASTEI00952 Anopheles stephensi ASTEI00952 I
BGLB014390 Biomphalaria glabrata BGLB014390 I
LLOJ002533 Lutzomyia longipalpis LLOJ002533 I
MDOA003678 Musca domestica MDOA003678 I
PPAI007934 Phlebotomus papatasi PPAI007934 I
HelroG87232 Helobdella robusta HelroG87232 N