Pavir.J13538 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.J13538 T196765_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.867 0.972
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.867 0.972
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.867 0.972
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.862 0.944
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.847 0.861
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.847 0.861
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.843 0.861
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.861
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.838 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.832 0.778
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.832 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.823 0.833
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.833
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.833
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J13538.1.p GATA 162 197

Links

Other GATA family TFs
Other Panicum virgatum TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SP8 Homo sapiens ENSG00000164651 D
SP7 Homo sapiens ENSG00000170374 D
SP9 Homo sapiens ENSG00000217236 D
Sp7 Mus musculus ENSMUSG00000060284 D
CapteG224157 Capitella teleta CapteG224157 I
CapteG39149 Capitella teleta CapteG39149 I
CapteG39158 Capitella teleta CapteG39158 I
CGI_10004780 Crassostrea gigas CGI_10004780 I
DAPPUDRAFT_106303 Daphnia pulex DAPPUDRAFT_106303 I
SP7 Anolis carolinensis ENSACAG00000000606 I
SP6 Anolis carolinensis ENSACAG00000006831 I
ENSAMEG00000019390 Ailuropoda melanoleuca ENSAMEG00000019390 I
ENSAMXG00000004709 Astyanax mexicanus ENSAMXG00000004709 I
ENSAMXG00000015246 Astyanax mexicanus ENSAMXG00000015246 I
ENSAMXG00000020011 Astyanax mexicanus ENSAMXG00000020011 I
ENSAMXG00000024824 Astyanax mexicanus ENSAMXG00000024824 I
SP8 Bos taurus ENSBTAG00000002604 I
SP9 Bos taurus ENSBTAG00000014949 I
SP7 Bos taurus ENSBTAG00000033292 I
SP7 Canis familiaris ENSCAFG00000025559 I
SP8 Callithrix jacchus ENSCJAG00000001245 I
SP7 Callithrix jacchus ENSCJAG00000018549 I
ENSCPOG00000019815 Cavia porcellus ENSCPOG00000019815 I
SP8 Cavia porcellus ENSCPOG00000026910 I
ENSCSAG00000013600 Chlorocebus sabaeus ENSCSAG00000013600 I
ENSCSAG00000014648 Chlorocebus sabaeus ENSCSAG00000014648 I
ENSCSAG00000019258 Chlorocebus sabaeus ENSCSAG00000019258 I
sp8a Danio rerio ENSDARG00000011870 I
sp7 Danio rerio ENSDARG00000019516 I
sp8b Danio rerio ENSDARG00000056666 I
sp9 Danio rerio ENSDARG00000099374 I
SP7 Dasypus novemcinctus ENSDNOG00000013009 I
SP9 Dasypus novemcinctus ENSDNOG00000019150 I
ENSECAG00000002849 Equus caballus ENSECAG00000002849 I
SP7 Equus caballus ENSECAG00000020140 I
SP8 Erinaceus europaeus ENSEEUG00000000621 I
SP7 Felis catus ENSFCAG00000030976 I
SP9 Gasterosteus aculeatus ENSGACG00000004757 I
SP8 Gasterosteus aculeatus ENSGACG00000006479 I
sp7 Gasterosteus aculeatus ENSGACG00000006641 I
sp8b Gasterosteus aculeatus ENSGACG00000008062 I
SP9 Gorilla gorilla ENSGGOG00000007345 I
SP7 Gorilla gorilla ENSGGOG00000015818 I
ENSGMOG00000001278 Gadus morhua ENSGMOG00000001278 I
ENSGMOG00000004590 Gadus morhua ENSGMOG00000004590 I
ENSGMOG00000008078 Gadus morhua ENSGMOG00000008078 I
ENSGMOG00000017717 Gadus morhua ENSGMOG00000017717 I
ENSLACG00000013206 Latimeria chalumnae ENSLACG00000013206 I
SP7 Loxodonta africana ENSLAFG00000013129 I
ENSLOCG00000005679 Lepisosteus oculatus ENSLOCG00000005679 I
ENSLOCG00000007391 Lepisosteus oculatus ENSLOCG00000007391 I
ENSLOCG00000011486 Lepisosteus oculatus ENSLOCG00000011486 I
ENSMEUG00000012808 Macropus eugenii ENSMEUG00000012808 I
SP8 Macaca mulatta ENSMMUG00000003722 I
SP7 Macaca mulatta ENSMMUG00000022039 I
SP9 Macaca mulatta ENSMMUG00000023005 I
SP8 Monodelphis domestica ENSMODG00000001375 I
SP9 Monodelphis domestica ENSMODG00000009303 I
ENSMPUG00000006036 Mustela putorius furo ENSMPUG00000006036 I
ENSMPUG00000013919 Mustela putorius furo ENSMPUG00000013919 I
Sp8 Mus musculus ENSMUSG00000048562 I
Sp9 Mus musculus ENSMUSG00000068859 I
ENSNLEG00000016729 Nomascus leucogenys ENSNLEG00000016729 I
ENSNLEG00000017701 Nomascus leucogenys ENSNLEG00000017701 I
SP7 Oryctolagus cuniculus ENSOCUG00000003811 I
SP7 Otolemur garnettii ENSOGAG00000032371 I
SP9 Otolemur garnettii ENSOGAG00000034062 I
ENSONIG00000002896 Oreochromis niloticus ENSONIG00000002896 I
ENSONIG00000005114 Oreochromis niloticus ENSONIG00000005114 I
ENSONIG00000008657 Oreochromis niloticus ENSONIG00000008657 I
ENSONIG00000010871 Oreochromis niloticus ENSONIG00000010871 I
SP7 Ochotona princeps ENSOPRG00000015704 I
SP8 Oryzias latipes ENSORLG00000003978 I
sp7 Oryzias latipes ENSORLG00000005215 I
sp8b Oryzias latipes ENSORLG00000007242 I
SP9 Oryzias latipes ENSORLG00000017492 I
ENSPANG00000014421 Papio anubis ENSPANG00000014421 I
ENSPANG00000016221 Papio anubis ENSPANG00000016221 I
ENSPANG00000023061 Papio anubis ENSPANG00000023061 I
SP7 Procavia capensis ENSPCAG00000012545 I
SP9 Procavia capensis ENSPCAG00000012721 I
ENSPFOG00000001566 Poecilia formosa ENSPFOG00000001566 I
ENSPFOG00000007503 Poecilia formosa ENSPFOG00000007503 I
ENSPFOG00000007998 Poecilia formosa ENSPFOG00000007998 I
ENSPFOG00000013459 Poecilia formosa ENSPFOG00000013459 I
ENSPPYG00000017747 Pongo abelii ENSPPYG00000017747 I
SP8 Pan troglodytes ENSPTRG00000018968 I
SP8 Pteropus vampyrus ENSPVAG00000005109 I
SP7 Pteropus vampyrus ENSPVAG00000012279 I
Sp8 Rattus norvegicus ENSRNOG00000005943 I
Sp7 Rattus norvegicus ENSRNOG00000014082 I
Sp9 Rattus norvegicus ENSRNOG00000028187 I
ENSSHAG00000005844 Sarcophilus harrisii ENSSHAG00000005844 I
ENSSSCG00000000269 Sus scrofa ENSSSCG00000000269 I
ENSSSCG00000029407 Sus scrofa ENSSSCG00000029407 I
ENSSTOG00000025061 Ictidomys tridecemlineatus ENSSTOG00000025061 I
ENSSTOG00000028058 Ictidomys tridecemlineatus ENSSTOG00000028058 I
ENSTGUG00000002679 Taeniopygia guttata ENSTGUG00000002679 I
SP8 Tetraodon nigroviridis ENSTNIG00000002903 I
sp7 Tetraodon nigroviridis ENSTNIG00000007064 I
SP9 Tetraodon nigroviridis ENSTNIG00000016949 I
sp8b Tetraodon nigroviridis ENSTNIG00000018442 I
SP8 Takifugu rubripes ENSTRUG00000008153 I
sp7 Takifugu rubripes ENSTRUG00000014417 I
sp8b Takifugu rubripes ENSTRUG00000015810 I
SP9 Takifugu rubripes ENSTRUG00000017609 I
SP7 Tursiops truncatus ENSTTRG00000002784 I
SP8 Tursiops truncatus ENSTTRG00000013387 I
ENSXMAG00000000590 Xiphophorus maculatus ENSXMAG00000000590 I
ENSXMAG00000005380 Xiphophorus maculatus ENSXMAG00000005380 I
ENSXMAG00000017840 Xiphophorus maculatus ENSXMAG00000017840 I
ISCW023685 Ixodes scapularis ISCW023685 I
SMAR004954 Strigamia maritima SMAR004954 I
SPU_011280 Strongylocentrotus purpuratus SPU_011280 I
SPU_016114 Strongylocentrotus purpuratus SPU_016114 I
Aan_R009569 Calypte anna Aan_R009569 I
Alligator_sinensis_CCG005389.1 Alligator sinensis Alligator_sinensis_CCG005389.1 I
Alligator_sinensis_CCG014455.1 Alligator sinensis Alligator_sinensis_CCG014455.1 I
Cmyd_10015831 Chelonia mydas Cmyd_10015831 I
Cmyd_10021667 Chelonia mydas Cmyd_10021667 I
ENSBTAP00000005689-D1 Bos grunniens ENSBTAP00000005689-D1 I
ENSP00000302812 Macaca fascicularis ENSP00000302812 I
Myotis_brandtii_SP7_10022993 Myotis brandtii Myotis_brandtii_SP7_10022993 I
Ogr12594 Ophisaurus gracilis Ogr12594 I
Ogr16980 Ophisaurus gracilis Ogr16980 I
Pvit_07436 Pogona vitticeps Pvit_07436 I
Pvit_11839 Pogona vitticeps Pvit_11839 I
Ocbimv22028511m.g Octopus bimaculoides Ocbimv22028511m.g I
Ocbimv22028516m.g Octopus bimaculoides Ocbimv22028516m.g I
Sakowv30026942m.g Saccoglossus kowalevskii Sakowv30026942m.g I
sp8.L Xenopus laevis XB-GENE-1216193 I
sp9 Xenopus tropicalis XB-GENE-5931012 I
sp7 Xenopus tropicalis XB-GENE-954330 I
sp7.L Xenopus laevis XB-GENE-954333 I
XP_002933331 Xenopus tropicalis XP_002933331 I
XP_002933332 Xenopus tropicalis XP_002933332 I
XP_002933333 Xenopus tropicalis XP_002933333 I
nRc.2.0.1.g47400 Romanomermis culicivorax nRc.2.0.1.g47400 I