LjSGA_052745.2 (Lotus japonicus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 LjSGA_052745.2 T197111_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.853 0.861
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.853 0.861
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.853 0.889
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.833 0.833
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.833 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.833 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.833 0.806
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.832 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.832 0.778
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.832 0.778
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.832 0.778
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.830 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.830 0.806
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.833
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.819 0.778
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.819 0.778
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.819 0.778
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.819 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_052745.2 GATA 220 255

Links

Other GATA family TFs
Other Lotus japonicus TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AFUN010327 Anopheles funestus AFUN010327 N
ACHR000531 Anopheles christyi ACHR000531 N
ACHR003205 Anopheles christyi ACHR003205 N
ACOM030952 Anopheles coluzzii ACOM030952 N
ACOM030968 Anopheles coluzzii ACOM030968 N
ACUA001624 Anopheles culicifacies ACUA001624 N
ACUA013501 Anopheles culicifacies ACUA013501 N
ADIR000747 Anopheles dirus ADIR000747 N
ADIR000749 Anopheles dirus ADIR000749 N
AEPI000388 Anopheles epiroticus AEPI000388 N
AEPI000391 Anopheles epiroticus AEPI000391 N
AFAF016537 Anopheles farauti AFAF016537 N
AFUN010324 Anopheles funestus AFUN010324 N
AATE020717 Anopheles atroparvus AATE020717 N
AMAM001181 Anopheles maculatus AMAM001181 N
AMAM021192 Anopheles maculatus AMAM021192 N
AMEC002017 Anopheles melas AMEC002017 N
AMEC011119 Anopheles melas AMEC011119 N
AMEM007634 Anopheles merus AMEM007634 N
AMEM014363 Anopheles merus AMEM014363 N
AMIN006409 Anopheles minimus AMIN006409 N
AMIN006412 Anopheles minimus AMIN006412 N
AQUA003680 Anopheles quadriannulatus AQUA003680 N
AQUA014420 Anopheles quadriannulatus AQUA014420 N
ASIS001250 Anopheles sinensis ASIS001250 N
ASTEI01637 Anopheles stephensi ASTEI01637 N
L798_14385 Zootermopsis nevadensis L798_14385 N
CpipJ_CPIJ000955 Culex pipiens CpipJ_CPIJ000955 N
AAEL001637 Aedes aegypti AAEL001637 N
AAEL001652 Aedes aegypti AAEL001652 N
ACEP11448 Atta cephalotes ACEP11448 N
ADAC000872 Anopheles darlingi ADAC000872 N
AGAP007822 Anopheles gambiae AGAP007822 N
AGAP007824 Anopheles gambiae AGAP007824 N
CPIJ000953 Culex quinquefasciatus CPIJ000953 N
CPIJ000955 Culex quinquefasciatus CPIJ000955 N
DAPPUDRAFT_45040 Daphnia pulex DAPPUDRAFT_45040 N
GB41320 Apis mellifera GB41320 N
ISCW003677 Ixodes scapularis ISCW003677 N
CpipJ_CPIJ000953 Culex pipiens CpipJ_CPIJ000953 N
SINV12291 Solenopsis invicta SINV12291 N
TC003170 Tribolium castaneum TC003170 N
YQE_07457 Dendroctonus ponderosae YQE_07457 N
Cflo_10835--XP_001121050.1_APIME Camponotus floridanus Cflo_10835--XP_001121050.1_APIME N
Hsal_11851--XP_001121050.1_APIME Harpegnathos saltator Hsal_11851--XP_001121050.1_APIME N
LDEC024027 Leptinotarsa decemlineata LDEC024027 N
AALB001157 Anopheles albimanus AALB001157 N
AALB001160 Anopheles albimanus AALB001160 N
AARA012018 Anopheles arabiensis AARA012018 N
AARA012021 Anopheles arabiensis AARA012021 N
AATE014155 Anopheles atroparvus AATE014155 N
AATE016471 Anopheles atroparvus AATE016471 N