CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NBR_0001940901
(
Nippostrongylus brasiliensis
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
NBR_0001940901
T197686_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG13549
M01231_2.00
Caenorhabditis briggsae
NTGATAAN
NTTATCAN
PBM
Lambert et al.(2019)
pTH11492
0.842
0.886
elt-6
M00666_2.00
Caenorhabditis elegans
NTGATAAN
NTTATCAN
PBM
Narasimhan et al.(2015)
pTH10707
0.838
0.857
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NBR_0001940901-mRNA-1
GATA
44
78
CSNCMTTKTTAWRRDMSGKLVCNACGLYFRLHRTH
Links
Other
GATA
family TFs
Other
Nippostrongylus brasiliensis
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nLs.2.1.2.g08987
Litomosoides sigmodontis
nLs.2.1.2.g08987
N
TCLT_0001063701
Thelazia callipaeda
TCLT_0001063701
N