CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SNAPOd2T00016626001
(
Oikopleura dioica
)
Grainyhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04516 (CP2)
IPR007604
SNAPOd2T00016626001
T199602_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GRHL2
M08129_2.00
Homo sapiens
NNNAACTGGTTTNNN
NNNAAACCAGTTNNN
ChIP-seq
Mathelier et al.(2014)
MA1105.1
0.700
0.700
GRHL2
M09125_2.00
Homo sapiens
AACYDGYYBDDC
GHHVRRCHRGTT
Misc
Kulakovskiy et al.(2013)
GRHL2_HUMAN.H11MO.0.A
0.700
0.700
Grhl2
M09126_2.00
Mus musculus
RDCCDGTYYKDC
GHMRRACHGGHY
Misc
Kulakovskiy et al.(2013)
GRHL2_MOUSE.H11MO.0.A
0.700
0.700
GRHL2
M09558_2.00
Homo sapiens
NRAACHDGHHDDDCHDGTTY
RAACHDGHHHDDCHDGTTYN
Misc
Heinz et al.(2010)
HBE-GRHL2_GSE46194
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00016626001
Grainyhead
1
40
MRRNSKPAHRATVQLKVFCDKGAERKIRDEERKALRKKGG
Links
Other
Grainyhead
family TFs
Other
Oikopleura dioica
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00137p00104280
Amborella trichopoda
AMTR_s00137p00104280
I
BRADI1G16010
Brachypodium distachyon
BRADI1G16010
I
GRMZM2G455889
Zea mays
GRMZM2G455889
I
GSMUA_Achr2G13410_001
Musa acuminata
GSMUA_Achr2G13410_001
I
MLOC_70662
Hordeum vulgare
MLOC_70662
I
PGSC0003DMG400020929
Solanum tuberosum
PGSC0003DMG400020929
I
PGSC0003DMG400026020
Solanum tuberosum
PGSC0003DMG400026020
I
Solyc01g090840.2
Solanum lycopersicum
Solyc01g090840.2
I
Bo2g161550
Brassica oleracea
Bo2g161550
N