CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0007s12480
(
Populus trichocarpa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
POPTR_0007s12480
T201207_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0007s12480.1
GRAS
176
545
FIQELIKAADCFDTNELQLAQAILERLNHRLQSPIGKPLQRAAFFFKDALQSLLATGSTRPQTNPVIPSWSNIVQTIKAYEAFFRISPIPMFADFTTNQAILDSLNGNSVFLHVIDFDIGFGCHYASLMRELVDKADSCNNLTSPLLRITAVITEDTVIETKLIKERLSQFAHELKIRLHIEFVPFRTFEMLSFKAIEFVDGEKTAVILSPIIFRRLGSTNNVTTFVNDVRRVSPSVVIVVDSEGWTESGTGSSFRRNFVDCLEFYSMMFDSLDAAAITGGDWARKIEIFLLKPKILAAVEGCGRRVASRWREVFVGAGMRPVHLSQFADFQAESLLGKVQVRGFYVAKRLAELVLCWKDRPLIATSAWK
Links
Other
GRAS
family TFs
Other
Populus trichocarpa
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0005s12730
Populus trichocarpa
POPTR_0005s12730
N
0.842
29646.m001070
Ricinus communis
29646.m001070
N
0.701
SapurV1A.0255s0090
Salix purpurea
SapurV1A.0255s0090
N
0.903
SapurV1A.0817s0080
Salix purpurea
SapurV1A.0817s0080
N
0.822
chr4.CM0165.310.nd
Lotus japonicus
chr4.CM0165.310.nd
N
0.782