CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10008391m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10008391m.g
T202346_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10008390m
GRAS
378
749
LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTSAADMLKAYQTYMLVCPFKKAAIIFANHSMMRFTENANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETIKVEDLKLRQGEYVVVNSLFRFKNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLARENEMRLMFEKEFYGREIINVVACEGTERVERPETYKQWQARLVRAGFRQLPLDKELMQNLKLKIDNGYDKNFDVDQNSNWLLQGWKGRIVYASSVWV
Carubv10008391m
GRAS
378
749
LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTSAADMLKAYQTYMLVCPFKKAAIIFANHSMMRFTENANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETIKVEDLKLRQGEYVVVNSLFRFKNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLARENEMRLMFEKEFYGREIINVVACEGTERVERPETYKQWQARLVRAGFRQLPLDKELMQNLKLKIDNGYDKNFDVDQNSNWLLQGWKGRIVYASSVWV
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CAD26113
Encephalitozoon cuniculi
CAD26113
N
0.000
EHEL_111920
Encephalitozoon hellem
EHEL_111920
N
0.000
Eint_111930
Encephalitozoon intestinalis
Eint_111930
N
0.000
EROM_111920
Encephalitozoon romaleae
EROM_111920
N
0.000
THOM_2765
Trachipleistophora hominis
THOM_2765
N
0.000
VCUG_02591
Vavraia culicis
VCUG_02591
N
0.000
VICG_01897
Vittaforma corneae
VICG_01897
N
0.000