CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10011141m.g
(
Citrus clementina
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Ciclev10011141m.g
T202388_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10011140m
GRAS
374
745
LRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKKATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWK
Ciclev10011141m
GRAS
374
745
LRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKKATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWK
Links
Other
GRAS
family TFs
Other
Citrus clementina
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PMAA_052840
Penicillium marneffei
PMAA_052840
I
0.000
CGGC5_7827
Colletotrichum gloeosporioides
CGGC5_7827
I
0.000
PMAA_052840
Talaromyces marneffei
PMAA_052840
I
0.000
NechaG45265
Fusarium solani
NechaG45265
N
0.000
estExt_fgenesh1_pg.C_80373
Cryphonectria parasitica
estExt_fgenesh1_pg.C_80373
N
0.000
e_gw1.9.18.1
Nectria haematococca
e_gw1.9.18.1
N
0.000
Z517_05565
Fonsecaea pedrosoi
Z517_05565
N
0.000
VDBG_09240
Verticillium alfalfae
VDBG_09240
N
0.000
VDAG_07398
Verticillium dahliae
VDAG_07398
N
0.000
SAPIO_CDS7742
Scedosporium apiospermum
SAPIO_CDS7742
N
0.000
PVAR5_7652
Byssochlamys spectabilis
PVAR5_7652
N
0.000
PV07_03085
Cladophialophora immunda
PV07_03085
N
0.000
PFICI_05072
Pestalotiopsis fici
PFICI_05072
N
0.000
PFICI_04048
Pestalotiopsis fici
PFICI_04048
N
0.000
OCS_03672
Ophiocordyceps sinensis
OCS_03672
N
0.000
ACLA_076400
Aspergillus clavatus
CADACLAG00006786
N
0.000
MGG_07386
Magnaporthe oryzae
MGG_07386
N
0.000
MAPG_09245
Magnaporthe poae
MAPG_09245
N
0.000
GLRG_11053
Colletotrichum graminicola
GLRG_11053
N
0.000
GGTG_12739
Gaeumannomyces graminis
GGTG_12739
N
0.000
G647_06217
Cladophialophora carrionii
G647_06217
N
0.000
EURHEDRAFT_413664
Aspergillus ruber
EURHEDRAFT_413664
N
0.000
CSUB01_08092
Colletotrichum sublineola
CSUB01_08092
N
0.000
Cob_00662
Colletotrichum orbiculare
Cob_00662
N
0.000
CH063_11411
Colletotrichum higginsianum
CH063_11411
N
0.000
CGGC5_10999
Colletotrichum gloeosporioides
CGGC5_10999
N
0.000
NFIA_092930
Neosartorya fischeri
CADNFIAG00007525
N
0.000
AFUA_2G17511
Aspergillus fumigatus
CADAFUAG00004564
N
0.000