CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J04205
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J04205
T203039_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J04205.1.p
GRAS
227
597
IRTILIHCAQAVAANDHKRAGELLKQIKQHASETGDVTQRLAQCFARGLEARLVGMGSQVWQLLRAEHISIVEFLKAHNLCMTACSFNRVMLLFSTMTILQAMVGKRRLHIVDYGMHYGFHWAELLRLLARREGGPPKVKITAIGYSRKGGPEKIEETGRRLSKCAHELGVPFHFHAIRKEWEEVCIEDLDKDAEDVLIVNDRFSFNTLMDESIFFDDPSPKDTVLQNIRNMRPDVFIQSILNTSYGSSYLSRFREALSYYTAMFDIFDAIIPRESKTRVVLEQDVFGRFALNIIACEGADLMERPEKYKQWQARNQRAGLRQLPLEPAIVDVLKDKATRCHHKDFLICEDGQWLLHGWMGRILCAQSAWV
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb05g027810
Sorghum bicolor
Sb05g027810
N
0.729
Si012046m.g
Setaria italica
Si012046m.g
N
0.751
Si012328m.g
Setaria italica
Si012328m.g
N
0.778
Si024639m.g
Setaria italica
Si024639m.g
N
0.751
Pavir.Ca01143
Panicum virgatum
Pavir.Ca01143
N
0.894