CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J11985
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J11985
T203052_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J11985.1.p
GRAS
74
365
LVHLLMSCAGAVEAGDHAGASAHLTDAHAALAAVSPASGIGRVAVHFTAALSRRLFPPTPSPPPPLAAADADHGFLYHHFYEAGPYLKFAHFTANQAILEAVQGCRHVHIIDFNLMQGLQWPALIQALALRPGGPPFLRLTGIGPPSPPGRDDLRDVGVRLADLARSVRVHFSFRGVAANRLDEVRPWMLQVSQGEAIAVNSVLQLHRLVGDPPAADGRAPIDAVLDCVASLRPRVFTVVEQEADHNKPGFLDRFTEALFYYSAVFDSLDAASGGAGDAAAEAYLEREICDI
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA001121
Oryza indica
BGIOSGA001121
N
0.823
BRADI2G45117
Brachypodium distachyon
BRADI2G45117
N
0.778
GRMZM2G001426
Zea mays
GRMZM2G001426
N
0.903
GRMZM5G826526
Zea mays
GRMZM5G826526
N
0.845
OMERI01G24610
Oryza meridionalis
OMERI01G24610
N
0.819
ORGLA01G0197900
Oryza glaberrima
ORGLA01G0197900
N
0.823
ORUFI01G27440
Oryza rufipogon
ORUFI01G27440
N
0.823
OS01G0646300
Oryza sativa
OS01G0646300
N
0.823
Sb03g029470
Sorghum bicolor
Sb03g029470
N
0.721
Si001293m.g
Setaria italica
Si001293m.g
N
0.948
Pavir.J09720
Panicum virgatum
Pavir.J09720
N
0.741