CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J13478
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J13478
T203056_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J13478.1.p
GRAS
31
405
LHTLLLHCAKAVIDDRQSAHELLRQIKEHASPTGDTTQRLAHCFAQGLEARLAGKGAQVYRSLTANRTSLVEFLKAYQLFMSTCCFRKVAFTFANKAIFDAAVGRSKLHIVDYGLHSGFQWPELLRLLGTRDGGPPEVRITGIDIPQPEVRIIDIDIPANHMAEVGHRLSNCARQLCVPLKFDAVVAEWHTVCIGHLNVEPDEILVVNDLFNFRILMDEGYSPSPRDVVLSNISKMKPDVFIQGIVNGSYGTFFLSRFREALFYHSALFDMFDATMPRDSQLRLVLERDIIGWVALNAIACEGEDRVERGETYKQWQVRNQRAGLRQLPLNAETVKMVRGMVRDHYHKDFVIEEGQQWLLQGWKGRILLAHSLWV
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CIMG_05222
Coccidioides immitis
CIMG_05222
N
ATEG_01164
Aspergillus terreus
CADATEAG00001554
N
CPC735_064900
Coccidioides posadasii
CPC735_064900
N
PCH_Pc20g14610
Penicillium rubens
PCH_Pc20g14610
N
PDIP_89310
Penicillium digitatum
PDIP_89310
N
PEX1_079120
Penicillium expansum
PEX1_079120
N
PITC_016620
Penicillium italicum
PITC_016620
N
PVAR5_3187
Byssochlamys spectabilis
PVAR5_3187
N
U727_00431430651
Penicillium solitum
U727_00431430651
N
UREG_06397
Uncinocarpus reesii
UREG_06397
N
Pc20g14610
Penicillium chrysogenum
Pc20g14610
N