CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra023506 *(Brassica rapa)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	Bra023506	T205131_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.861	0.929
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.861	0.929
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.845	0.929
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.845	0.929
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.723	0.893
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.723	0.893
ATHB-51 M00867_2.00	Arabidopsis thaliana	ATWATKNN	NNMATWAT	PBM Franco-Zorrilla et al.(2014) ATHB51	0.711	0.607
ATHB-51 M06927_2.00	Arabidopsis thaliana	DNCAATAATTGAD	HTCAATTATTGNH	Dap-seq OMalley et al.(2016) LMI1_col_a	0.711	0.607
ATHB-51 M06928_2.00	Arabidopsis thaliana	NDNCAATAATTGA	TCAATTATTGNHN	Dap-seq OMalley et al.(2016) LMI1_colamp_a	0.711	0.607
ATHB-22 M02041_2.00	Arabidopsis thaliana	NNATAATWWWNNN	NNNWWWATTATNN	PBM Weirauch et al.(2014) pTH5883	0.708	0.625
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.694	0.821
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.675	0.786
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.675	0.786
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.675	0.786
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.675	0.786
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.662	0.768
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.662	0.768
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.662	0.768
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.662	0.768
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.657	0.804
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.657	0.804
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.657	0.804
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.657	0.804
ATHB-12 M00865_2.00	Arabidopsis thaliana	NNNNNNNN	NNNNNNNN	PBM Franco-Zorrilla et al.(2014) ATHB12	0.617	0.589
ATHB-12 M02045_2.00	Arabidopsis thaliana	BHWWWWWWDV	BHWWWWWWDV	PBM Weirauch et al.(2014) pTH7207	0.617	0.589
Q39944_HELAN M10802_2.00	Helianthus annuus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HAHB4_01	0.606	0.518
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.600	0.643
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.600	0.643
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra023506.1-P	Homeodomain	92	147	EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Brassica rapa* TFs

786 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ADIR001048	Anopheles dirus	ADIR001048	N
SINV15756	Solenopsis invicta	SINV15756	N
TC014708	Tribolium castaneum	TC014708	N
Cflo_11381--XP_391906.3_APIME	Camponotus floridanus	Cflo_11381--XP_391906.3_APIME	N
Hsal_04301--XP_391906.3_APIME	Harpegnathos saltator	Hsal_04301--XP_391906.3_APIME	N
HHAL007230-PA	Halyomorpha halys	HHAL007230-PA	N
AARA010518	Anopheles arabiensis	AARA010518	N
ACOM037786	Anopheles coluzzii	ACOM037786	N
ACUA009064	Anopheles culicifacies	ACUA009064	N
ACUA021284	Anopheles culicifacies	ACUA021284	N
PHUM363570	Pediculus humanus	PHUM363570	N
AEPI002999	Anopheles epiroticus	AEPI002999	N
AFAF003258	Anopheles farauti	AFAF003258	N
AFUN002858	Anopheles funestus	AFUN002858	N
AMEC007532	Anopheles melas	AMEC007532	N
AMEM000708	Anopheles merus	AMEM000708	N
AMIN005282	Anopheles minimus	AMIN005282	N
AQUA008196	Anopheles quadriannulatus	AQUA008196	N
ASIS002506	Anopheles sinensis	ASIS002506	N
ASTEI10578	Anopheles stephensi	ASTEI10578	N
GI15077	Drosophila mojavensis	FBgn0137827	N
AAEL011359	Aedes aegypti	AAEL011359	N
ACEP10864	Atta cephalotes	ACEP10864	N
AGAP013287	Anopheles gambiae	AGAP013287	N
CPIJ019088	Culex quinquefasciatus	CPIJ019088	N
NFAT	Drosophila melanogaster	FBgn0030505	N
GA10815	Drosophila pseudoobscura	FBgn0070871	N
GF21808	Drosophila ananassae	FBgn0098808	N
GG17798	Drosophila erecta	FBgn0110020	N
GH12805	Drosophila grimshawi	FBgn0120284	N
CpipJ_CPIJ019088	Culex pipiens	CpipJ_CPIJ019088	N
GL22604	Drosophila persimilis	FBgn0160195	N
GM17623	Drosophila sechellia	FBgn0172531	N
GJ18884	Drosophila virilis	FBgn0206030	N
GK24938	Drosophila willistoni	FBgn0226897	N
GE17094	Drosophila yakuba	FBgn0234577	N
GB45138	Apis mellifera	GB45138	N
L798_07911	Zootermopsis nevadensis	L798_07911	N
NV18092	Nasonia vitripennis	NV18092	N

Bra023506 (Brassica rapa) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

786 Related TFs

Bra023506 **(Brassica rapa)
Homeodomain**