CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CJA03203 *(Caenorhabditis japonica)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	CJA03203	T205933_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Six3 M00483_2.00	Mus musculus	NNNAYMN	NKRTNNN	PBM Berger et al.(2008) Six3_1732	0.842	0.895
SIX3 M05159_2.00	Homo sapiens	NNYGATABBN	NVVTATCRNN	SELEX Yin et al.(2017) SIX3_eDBD_HT-SELEX	0.842	0.895
SIX3 M10698_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SIX3_Q6	0.842	0.895
SIX3 M05160_2.00	Homo sapiens	NNYGATABVB	VBVTATCRNN	SELEX Yin et al.(2017) SIX3_eDBD_Methyl-HT-SELEX	0.842	0.895
Optix M02124_2.00	Drosophila melanogaster	NNNNNDATMN	NKATHNNNNN	PBM Weirauch et al.(2014) pTH5437	0.842	0.877
Optix M03850_2.00	Drosophila melanogaster	TAATYTAATTA	TAATTARATTA	SELEX Nitta et al.(2015) Optix_1	0.842	0.877
Optix M06526_2.00	Drosophila melanogaster	TGATA	TATCA	B1H Mathelier et al.(2014) MA0199.1	0.842	0.877
Optix M06327_2.00	Drosophila melanogaster	HHVTGATA	TATCABDD	B1H Zhu et al.(2011) Optix_Cell_FBgn0025360	0.842	0.877
Optix M06328_2.00	Drosophila melanogaster	NNNTGATA	TATCANNN	B1H Zhu et al.(2011) Optix_SOLEXA_FBgn0025360	0.842	0.877
SIX6 M00326_2.00	Homo sapiens	NNDATMB	VKATHNN	PBM Barrera et al.(2016) SIX6_REF	0.840	0.877
Six6 M00169_2.00	Mus musculus	NNAYMNN	NNKRTNN	PBM Badis et al.(2009) Six6_2267	0.840	0.877
Six6 M00412_2.00	Mus musculus	NNNTGATAYCN	NGRTATCANNN	PBM Berger et al.(2008) Six6_2267	0.840	0.877
six3 M02102_2.00	Oryzias latipes	NNDAYMBNNN	NNNVKRTHNN	PBM Weirauch et al.(2014) pTH5928	0.840	0.877
SIX6 M05357_2.00	Homo sapiens	NNYGATASVB	VBSTATCRNN	SELEX Yin et al.(2017) SIX6_eDBD_HT-SELEX	0.840	0.877
SIX6 M00325_2.00	Homo sapiens	NNNDATMB	VKATHNNN	PBM Barrera et al.(2016) SIX6_H141N	0.840	0.877
SIX6 M05358_2.00	Homo sapiens	VBVYAYCRNN	NNYGRTRBVB	SELEX Yin et al.(2017) SIX6_eDBD_Methyl-HT-SELEX	0.840	0.877
SIX6 M00327_2.00	Homo sapiens	NHDAYMBNN	NNVKRTHDN	PBM Barrera et al.(2016) SIX6_T165A	0.834	0.860
For this family, TFs with SR scores > 0.599* will likely have a similar motif*