CRE05410 (Caenorhabditis remanei)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CRE05410 T206219_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ceh-24
M02181_2.00 		Caenorhabditis elegans
NNRAKWRNN
NNYWMTYNN		 PBM
Weirauch et al.(2014)
pTH6327 		0.867 1.000
scro
M03854_2.00 		Drosophila melanogaster
NNBRMGTGB
VCACKYVNN		 SELEX
Nitta et al.(2015)
scro_1 		0.848 0.860
Nkx2-1
M00385_2.00 		Mus musculus
NNRAGDRN
NYHCTYNN		 PBM
Berger et al.(2008)
Titf1_1722 		0.837 0.877
Nkx2-4
M00514_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-4_3074 		0.837 0.877
NKX2-1
M09146_2.00 		Homo sapiens
BTKGAGWGBN
NVCWCTCMAV		 Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A 		0.837 0.877
Nkx2-1
M09171_2.00 		Mus musculus
NBTKGAGWGB
VCWCTCMAVN		 Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A 		0.837 0.877
Nkx2-1
M09563_2.00 		Mus musculus
BTBRAGWGBH
DVCWCTYVAV		 Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252 		0.837 0.877
NKX2-1
M10694_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TITF1_Q3 		0.837 0.877
NKX2-1
M10695_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5_01 		0.837 0.877
NKX2-1
M10696_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5 		0.837 0.877
NKX2-1
M10697_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q6 		0.837 0.877
Nkx2-3
M00497_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-3_3435 		0.813 0.807
NKX2-3
M05042_2.00 		Homo sapiens
NNBAAGTGBN
NVCACTTVNN		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX 		0.813 0.807
NKX2-3
M05045_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX 		0.813 0.807
NKX2-3
M05043_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1 		0.813 0.807
NKX2-3
M05044_2.00 		Homo sapiens
SDYAACGHB
VDCGTTRHS		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2 		0.813 0.807
NKX2-3
M05046_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1 		0.813 0.807
NKX2-3
M05047_2.00 		Homo sapiens
SWYAACSHB
VDSGTTRWS		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2 		0.813 0.807
NKX2-5
M00323_2.00 		Homo sapiens
NWYAAGTGSNN
NNSCACTTRWN		 PBM
Barrera et al.(2016)
NKX2-5_REF 		0.803 0.807
Nkx2-5
M00404_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-5_3436 		0.803 0.807
NKX2-5
M05346_2.00 		Homo sapiens
BHYAAGTGBN
NVCACTTRDV		 SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX 		0.803 0.807
Nkx2-5
M02686_2.00 		Mus musculus
WTAAKWK
MWMTTAW		 SELEX
Mathelier et al.(2014)
MA0063.1 		0.803 0.807
Nkx2-5
M08136_2.00 		Mus musculus
SYTGAGWGSYH
DRSCWCTCARS		 ChIP-seq
Mathelier et al.(2014)
MA0503.1 		0.803 0.807
NKX2-5
M09163_2.00 		Homo sapiens
BKRAGWGV
BCWCTYMV		 Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B 		0.803 0.807
Nkx2-5
M09177_2.00 		Mus musculus
NBYBRAGTGS
SCACTYVRVN		 Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A 		0.803 0.807
Nkx2-5
M09567_2.00 		Mus musculus
HBRAGWGBNN
NNVCWCTYVD		 Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529 		0.803 0.807
NKX2-5
M10742_2.00 		Homo sapiens
TYAAGTG
CACTTRA		 Transfac
Matys et al.(2006)
V$NKX25_01 		0.803 0.807
NKX2-5
M10743_2.00 		Homo sapiens
CWTAATTV
BAATTAWG		 Transfac
Matys et al.(2006)
V$NKX25_02 		0.803 0.807
NKX2-5
M10744_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q5 		0.803 0.807
NKX2-5
M10745_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q6 		0.803 0.807
NKX2-5
M00321_2.00 		Homo sapiens
HNAAGTRBNN
NNVYACTTND		 PBM
Barrera et al.(2016)
NKX2-5_R161P 		0.803 0.807
NKX2-5
M05347_2.00 		Homo sapiens
BTYAAGTGGN
NCCACTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1 		0.803 0.807
NKX2-5
M05348_2.00 		Homo sapiens
BTYAACGAB
VTCGTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2 		0.803 0.807
NKX2-5
M00322_2.00 		Homo sapiens
NNNRNNN
NNNYNNN		 PBM
Barrera et al.(2016)
NKX2-5_R190C 		0.803 0.789
NKX2-5
M00324_2.00 		Homo sapiens
NHNNNNN
NNNNNDN		 PBM
Barrera et al.(2016)
NKX2-5_T178M 		0.803 0.789
ceh-28
M08210_2.00 		Caenorhabditis elegans
AATCGATW
WATCGATT		 ChIP-seq
Contrino et al.(2012)
Mw138 		0.797 0.702
Nkx2-2
M00438_2.00 		Mus musculus
NNNRAGDRN
NYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-2_2823 		0.784 0.825
Nkx2-2
M09190_2.00 		Mus musculus
NTBRAGWGBBN
NVVCWCTYVAN		 Misc
Kulakovskiy et al.(2013)
NKX22_MOUSE.H11MO.0.A 		0.784 0.825
NKX2-2
M10681_2.00 		Homo sapiens
WTAAGTRBTT
AAVYACTTAW		 Transfac
Matys et al.(2006)
V$NKX22_01 		0.784 0.825
NKX2-2
M10682_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3_01 		0.784 0.825
NKX2-2
M10683_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3 		0.784 0.825
vnd
M06551_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Mathelier et al.(2014)
MA0253.1 		0.784 0.807
vnd
M06377_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Zhu et al.(2011)
Vnd_Cell_FBgn0003986 		0.784 0.807
vnd
M06378_2.00 		Drosophila melanogaster
KYTSAAGWGY
RCWCTTSARM		 B1H
Zhu et al.(2011)
vnd_FlyReg_FBgn0003986 		0.784 0.807
vnd
M06379_2.00 		Drosophila melanogaster
BTBAAGTR
YACTTVAV		 B1H
Zhu et al.(2011)
Vnd_SOLEXA_FBgn0003986 		0.784 0.807
vnd
M09683_2.00 		Drosophila melanogaster
TCAAGTGB
VCACTTGA		 Misc
Kulakovskiy et al.(2009)
vnd 		0.784 0.807
Nkx2-9
M00520_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-9_3082 		0.777 0.807
Nkx2-9
M00800_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Weirauch et al.(2013)
pTH2842 		0.777 0.807
Nkx2-9
M09215_2.00 		Mus musculus
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C 		0.777 0.807
tin
M00559_2.00 		Drosophila melanogaster
NWYAAGTGGNN
NNCCACTTRWN		 PBM
Busser et al.(2012a)
Tin 		0.771 0.684
tin
M03809_2.00 		Drosophila melanogaster
BTYAAGTGSN
NSCACTTRAV		 SELEX
Nitta et al.(2015)
tin_1 		0.771 0.684
tin
M06284_2.00 		Drosophila melanogaster
BTYAAGTG
CACTTRAV		 B1H
Zhu et al.(2011)
Tin_Cell_FBgn0004110 		0.771 0.684
tin
M06285_2.00 		Drosophila melanogaster
BCTCAAGTGSVN
NBSCACTTGAGV		 B1H
Zhu et al.(2011)
tin_FlyReg_FBgn0004110 		0.771 0.684
tin
M06286_2.00 		Drosophila melanogaster
BWYAAGTR
YACTTRWV		 B1H
Zhu et al.(2011)
Tin_SOLEXA_FBgn0004110 		0.771 0.684
tin
M08421_2.00 		Drosophila melanogaster
DBTCRAGTGS
SCACTYGAVH		 ChIP-chip
Mathelier et al.(2014)
MA0247.2 		0.771 0.684
NKX2-5
M00320_2.00 		Homo sapiens
NHBAAKWRN
NYWMTTVDN		 PBM
Barrera et al.(2016)
NKX2-5_K183E 		0.770 0.789
Nkx2-6
M00496_2.00 		Mus musculus
HYAAGTRBNN
NNVYACTTRD		 PBM
Berger et al.(2008)
Nkx2-6_3437 		0.763 0.754
ceh-22
M00376_2.00 		Caenorhabditis elegans
WBRAGTRBNN
NNVYACTYVW		 PBM
Berger et al.(2006)
Ceh-22 		0.763 0.789
NKX2-8
M00302_2.00 		Homo sapiens
NNRAGDRB
VYHCTYNN		 PBM
Barrera et al.(2016)
NKX2-8_REF 		0.745 0.789
NKX2-8
M05149_2.00 		Homo sapiens
BTSRAGTGBN
NVCACTYSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_HT-SELEX 		0.745 0.789
NKX2-8
M09145_2.00 		Homo sapiens
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_HUMAN.H11MO.0.C 		0.745 0.789
NKX2-8
M05150_2.00 		Homo sapiens
GCARTAACGACATC
GATGTCGTTAYTGC		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_1 		0.745 0.789
NKX2-8
M05151_2.00 		Homo sapiens
BTSAAGTGBN
NVCACTTSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_2 		0.745 0.789
NKX2-8
M05152_2.00 		Homo sapiens
BTBAACGAB
VTCGTTVAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_3 		0.745 0.789
NKX2-8
M00301_2.00 		Homo sapiens
NNRAKDRB
VYHMTYNN		 PBM
Barrera et al.(2016)
NKX2-8_A94T 		0.745 0.772
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.600 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE05410 Homeodomain 155 211

Links

Other Homeodomain family TFs
Other Caenorhabditis remanei TFs

835 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BZIP68 Arabidopsis thaliana AT1G32150 D
PK23964.1 Cannabis sativa PK23964.1 D
HBP1A_WHEAT Triticum aestivum HBP1A_WHEAT D
Cla008988 Citrullus lanatus Cla008988 I
Bostr.3359s0141 Boechera stricta Bostr.3359s0141 I
mgf013375m Mimulus guttatus mgf013375m I
mgf008605m Mimulus guttatus mgf008605m I
mgf008195m Mimulus guttatus mgf008195m I
Cucsa.322110 Cucumis sativus Cucsa.322110 I
Cucsa.312800 Cucumis sativus Cucsa.312800 I
cassava37043.valid.m1 Manihot esculenta cassava37043.valid.m1 I
cassava11837.valid.m1 Manihot esculenta cassava11837.valid.m1 I
30068.m002661 Ricinus communis 30068.m002661 I
Pm023132 Prunus mume Pm023132 I
Cla016502 Citrullus lanatus Cla016502 I
Eucgr.E00223 Eucalyptus grandis Eucgr.E00223 I
Ca_15839 Cicer arietinum Ca_15839 I
Ca_11455 Cicer arietinum Ca_11455 I
VIT_02s0012g02250 Vitis vinifera VIT_02s0012g02250 I
TRIUR3_34165 Triticum urartu TRIUR3_34165 I
TRIUR3_18117 Triticum urartu TRIUR3_18117 I
Traes_6BS_05264DAEA Triticum aestivum Traes_6BS_05264DAEA I
Traes_5DL_C794C1EEA Triticum aestivum Traes_5DL_C794C1EEA I
Traes_5BS_A5532B750 Triticum aestivum Traes_5BS_A5532B750 I
Traes_5BL_A5532B750 Triticum aestivum Traes_5BL_A5532B750 I
Pavir.Ca00403 Panicum virgatum Pavir.Ca00403 I
PDK_20s1568831g001 Phoenix dactylifera PDK_20s1568831g001 I
PDK_20s1372692g002 Phoenix dactylifera PDK_20s1372692g002 I
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I
PDK_20s1310372g001 Phoenix dactylifera PDK_20s1310372g001 I
LjSGA_036158.1 Lotus japonicus LjSGA_036158.1 I
chr2.LjT41P23.50.nc Lotus japonicus chr2.LjT41P23.50.nc I
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I
SapurV1A.0063s0130 Salix purpurea SapurV1A.0063s0130 I
SapurV1A.0051s0250 Salix purpurea SapurV1A.0051s0250 I
Pavir.Cb01814 Panicum virgatum Pavir.Cb01814 I
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I
Pavir.Ab00132 Panicum virgatum Pavir.Ab00132 I
Pavir.Aa03436 Panicum virgatum Pavir.Aa03436 I
orange1.1g036551m.g Citrus sinensis orange1.1g036551m.g I
MDP0000286846 Malus domestica MDP0000286846 I
MDP0000185553 Malus domestica MDP0000185553 I
Gorai.003G185700 Gossypium raimondii Gorai.003G185700 I
gene13716-v1.0-hybrid Fragaria vesca gene13716-v1.0-hybrid I
evm.TU.supercontig_2741.1 Carica papaya evm.TU.supercontig_2741.1 I
TCM_016606 Theobroma cacao TCM_016606 I
Ciclev10001333m.g Citrus clementina Ciclev10001333m.g I
GLYMA16G15810 Glycine max GLYMA16G15810 I
OBART12G06770 Oryza barthii OBART12G06770 I
OB12G16310 Oryza brachyantha OB12G16310 I
OB02G12150 Oryza brachyantha OB02G12150 I
MTR_5g028850 Medicago truncatula MTR_5g028850 I
MLOC_63066 Hordeum vulgare MLOC_63066 I
LPERR12G05920 Leersia perrieri LPERR12G05920 I
GRMZM2G153144 Zea mays GRMZM2G153144 I
GRMZM2G088140 Zea mays GRMZM2G088140 I
GRMZM2G074373 Zea mays GRMZM2G074373 I
GRMZM2G019106 Zea mays GRMZM2G019106 I
OGLUM12G08090 Oryza glumaepatula OGLUM12G08090 I
GLYMA09G34170 Glycine max GLYMA09G34170 I
GLYMA08G34280 Glycine max GLYMA08G34280 I
GLYMA01G01740 Glycine max GLYMA01G01740 I
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I
F775_32205 Aegilops tauschii F775_32205 I
BRADI4G39630 Brachypodium distachyon BRADI4G39630 I
BRADI3G02730 Brachypodium distachyon BRADI3G02730 I
BGIOSGA036419 Oryza indica BGIOSGA036419 I
BGIOSGA007448 Oryza indica BGIOSGA007448 I
AMTR_s00138p00062920 Amborella trichopoda AMTR_s00138p00062920 I
PGSC0003DMG400018469 Solanum tuberosum PGSC0003DMG400018469 I
AMTR_s00048p00108400 Amborella trichopoda AMTR_s00048p00108400 I
Solyc08g076100.2 Solanum lycopersicum Solyc08g076100.2 I
Solyc08g005290.2 Solanum lycopersicum Solyc08g005290.2 I
Si022325m.g Setaria italica Si022325m.g I
Si017637m.g Setaria italica Si017637m.g I
Sb08g008300 Sorghum bicolor Sb08g008300 I
Sb04g002360 Sorghum bicolor Sb04g002360 I
PRUPE_ppa006484mg Prunus persica PRUPE_ppa006484mg I
POPTR_0003s09630 Populus trichocarpa POPTR_0003s09630 I
POPTR_0001s01840 Populus trichocarpa POPTR_0001s01840 I
Traes_5AS_3A85F1C2C Triticum aestivum Traes_5AS_3A85F1C2C I
OS02G0128200 Oryza sativa OS02G0128200 I
ORUFI12G07600 Oryza rufipogon ORUFI12G07600 I
ORGLA12G0063500 Oryza glaberrima ORGLA12G0063500 I
ORGLA02G0021500 Oryza glaberrima ORGLA02G0021500 I
OPUNC12G06450 Oryza punctata OPUNC12G06450 I
OPUNC02G01690 Oryza punctata OPUNC02G01690 I
ONIVA12G06500 Oryza nivara ONIVA12G06500 I
ONIVA02G02170 Oryza nivara ONIVA02G02170 I
OMERI12G04560 Oryza meridionalis OMERI12G04560 I
OLONG_021967 Oryza longistaminata OLONG_021967 I