CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSAMXG00000000147 *(Astyanax mexicanus)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSAMXG00000000147	T206990_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Cdx4 M09197_2.00	Mus musculus	WGATTTATDRBH	DVYHATAAATCW	Misc Kulakovskiy et al.(2013) CDX4_MOUSE.H11MO.0.A	0.862	0.982
CDX4 M05129_2.00	Homo sapiens	VKTTTATKRCH	DGYMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_HT-SELEX	0.862	0.965
CDX4 M05130_2.00	Homo sapiens	BGTCGTAAAHN	NDTTTACGACV	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_1	0.862	0.965
CDX4 M05131_2.00	Homo sapiens	VKTTTATKGCN	NGCMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_2	0.862	0.965
Cdx1 M00427_2.00	Mus musculus	NWWATDRNN	NNYHATWWN	PBM Berger et al.(2008) Cdx1_2245	0.831	0.912
CDX1 M03115_2.00	Homo sapiens	NTTTATKRB	VYMATAAAN	SELEX Jolma et al.(2013) CDX1_1	0.831	0.912
CDX1 M05018_2.00	Homo sapiens	VKTTTATKRCN	NGYMATAAAMB	SELEX Yin et al.(2017) CDX1_eDBD_HT-SELEX	0.831	0.912
CDX1 M09140_2.00	Homo sapiens	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_HUMAN.H11MO.0.C	0.831	0.912
Cdx1 M09186_2.00	Mus musculus	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_MOUSE.H11MO.0.C	0.831	0.912
CDX1 M10670_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q4	0.831	0.912
CDX1 M10671_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q5	0.831	0.912
CDX1 M05019_2.00	Homo sapiens	NGTCGTAAAWB	VWTTTACGACN	SELEX Yin et al.(2017) CDX1_eDBD_Methyl-HT-SELEX	0.831	0.912
Cdx2 M00447_2.00	Mus musculus	NWWAYDRNN	NNYHRTWWN	PBM Berger et al.(2008) Cdx2_4272	0.823	0.930
Cdx2 M09193_2.00	Mus musculus	BTTTATKRCYBY	RVRGYMATAAAV	Misc Kulakovskiy et al.(2013) CDX2_MOUSE.H11MO.0.A	0.823	0.930
Cdx2 M09572_2.00	Mus musculus	NTTTTATKRC	GYMATAAAAN	Misc Heinz et al.(2010) mES-Cdx2_GSE14586	0.823	0.930
CDX2 M03196_2.00	Homo sapiens	KTTTATKRB	VYMATAAAM	SELEX Jolma et al.(2013) CDX2_1	0.819	0.895
CDX2 M05248_2.00	Homo sapiens	NDTWAYRRYN	NRYYRTWAHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_1	0.819	0.895
CDX2 M05249_2.00	Homo sapiens	NDWWATKRB	VYMATWWHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_2	0.819	0.895
CDX2 M08131_2.00	Homo sapiens	YTTTATKRCHB	VDGYMATAAAR	ChIP-seq Mathelier et al.(2014) MA0465.1	0.819	0.895
CDX2 M09152_2.00	Homo sapiens	DTTBATKGCHNB	VNDGCMATVAAH	Misc Kulakovskiy et al.(2013) CDX2_HUMAN.H11MO.0.A	0.819	0.895
CDX2 M10723_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_01	0.819	0.895
CDX2 M10724_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_02	0.819	0.895
CDX2 M10725_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5	0.819	0.895
CDX2 M10726_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q6	0.819	0.895
CDX2 M05250_2.00	Homo sapiens	NRTCGTAWHBNN	NNVDWTACGAYN	SELEX Yin et al.(2017) CDX2_eDBD_Methyl-HT-SELEX	0.819	0.895
CDX1 M10761_2.00	Gallus gallus	BDBWAAK	MTTWVHV	Transfac Matys et al.(2006) V$CDXA_01	0.819	0.877
CDX1 M10762_2.00	Gallus gallus	WWWWMYR	YRKWAWW	Transfac Matys et al.(2006) V$CDXA_02	0.819	0.877
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.808	0.842
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.808	0.842
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.808	0.842
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.808	0.842
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.808	0.842
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.808	0.842
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.808	0.842
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.808	0.842
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.808	0.842
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.808	0.842
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.808	0.842
Q70LF3_ARTSF M02211_2.00	Artemia franciscana	BTAATTAB	VTAATTAV	PBM Weirauch et al.(2014) pTH5553	0.798	0.895
pal-1 M02183_2.00	Caenorhabditis elegans	GYAATWAA	TTWATTRC	PBM Weirauch et al.(2014) pTH6016	0.618	0.667
Q9GP48_9TURB M02217_2.00	Discocelis tigrina	DTAATTAB	VTAATTAH	PBM Weirauch et al.(2014) pTH6515	0.609	0.702
Q24782_9CNID M02206_2.00	Eleutheria dichotoma	TTAATTAA	TTAATTAA	PBM Weirauch et al.(2014) pTH5486	0.609	0.561
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSAMXP00000000149	Homeodomain	155	211	EKYRVVYTDHQRLELEKEFHFNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERK

Links
Other Homeodomain family TFs
Other *Astyanax mexicanus* TFs

317 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
1703276D	Xenopus laevis	1703276D	I	0.000
BGIBMGA008456	Bombyx mori	BGIBMGA008456	I	0.000
Brh_R008378	Buceros rhinoceros	Brh_R008378	I	0.000
CAA41846	Xenopus laevis	CAA41846	I	0.000
GBX2	Oryzias latipes	ENSORLG00000001376	I	0.000
RPRC010976	Rhodnius prolixus	RPRC010976	I	0.000
GM17434	Drosophila sechellia	FBgn0172344	I	0.000
ANCDUO_04800	Ancylostoma duodenale	ANCDUO_04800	N	0.000
NECAME_11765	Necator americanus	NECAME_11765	N	0.000
NBR_0000086301	Nippostrongylus brasiliensis	NBR_0000086301	N	0.000
HPBE_0002651601	Heligmosomoides bakeri	HPBE_0002651601	N	0.000
AMIN006246	Anopheles minimus	AMIN006246	N	0.000
ANCDUO_02794	Ancylostoma duodenale	ANCDUO_02794	N	0.000
ANCCEY_10591	Ancylostoma ceylanicum	ANCCEY_10591	N	0.000
ANCCAN_18983	Ancylostoma caninum	ANCCAN_18983	N	0.000
PPAI007203	Phlebotomus papatasi	PPAI007203	N	0.000
LLOJ004702	Lutzomyia longipalpis	LLOJ004702	N	0.000
ACHR001571	Anopheles christyi	ACHR001571	N	0.000
OFLC_0000421701	Onchocerca flexuosa	OFLC_0000421701	N	0.000
PEQ_0000993201	Parascaris equorum	PEQ_0000993201	N	0.000
SBAD_0000495201	Soboliphyme baturini	SBAD_0000495201	N	0.000
SPAL_0000530600	Strongyloides papillosus	SPAL_0000530600	N	0.000
SPER_0003632001	Spirometra erinaceieuropaei	SPER_0003632001	N	0.000
SPER_0003833401	Spirometra erinaceieuropaei	SPER_0003833401	N	0.000
SROB_0000845501	Schistosoma rodhaini	SROB_0000845501	N	0.000
SSLN_0000633001	Schistocephalus solidus	SSLN_0000633001	N	0.000
SVUK_0001081801	Strongylus vulgaris	SVUK_0001081801	N	0.000
T265_14387	Opisthorchis viverrini	T265_14387	N	0.000
TRE_0000162501	Trichobilharzia regenti	TRE_0000162501	N	0.000
TRE_0000179101	Trichobilharzia regenti	TRE_0000179101	N	0.000
TTAC_0000574501	Hydatigera taeniaeformis	TTAC_0000574501	N	0.000
Ogr19002	Ophisaurus gracilis	Ogr19002	N	0.000
ACEP24283	Atta cephalotes	ACEP24283	N	0.000
ACEP27605	Atta cephalotes	ACEP27605	N	0.000
ENSNLEG00000000365	Nomascus leucogenys	ENSNLEG00000000365	N	0.000
ENSOANG00000007774	Ornithorhynchus anatinus	ENSOANG00000007774	N	0.000
ENSPANG00000024818	Papio anubis	ENSPANG00000024818	N	0.000
ENSSHAG00000002450	Sarcophilus harrisii	ENSSHAG00000002450	N	0.000
ENSTGUG00000000339	Taeniopygia guttata	ENSTGUG00000000339	N	0.000
ENSXMAG00000013191	Xiphophorus maculatus	ENSXMAG00000013191	N	0.000
MCINX012038	Melitaea cinxia	MCINX012038	N	0.000
Smp_053520	Schistosoma mansoni	Smp_053520	N	0.000
Ogr05500	Ophisaurus gracilis	Ogr05500	N	0.000
AMIN002393	Anopheles minimus	AMIN002393	N	0.000
1703276C	Xenopus laevis	1703276C	N	0.000
CAA41845	Xenopus laevis	CAA41845	N	0.000
CLEC004114	Cimex lectularius	CLEC004114	N	0.000
HHAL004742-PA	Halyomorpha halys	HHAL004742-PA	N	0.000
LCUP011770	Lucilia cuprina	LCUP011770	N	0.000
LDEC016573	Leptinotarsa decemlineata	LDEC016573	N	0.000
AATE015217	Anopheles atroparvus	AATE015217	N	0.000
WUBG_09511	Wuchereria bancrofti	WUBG_09511	N	0.000
AEPI002459	Anopheles epiroticus	AEPI002459	N	0.000
AMAM004568	Anopheles maculatus	AMAM004568	N	0.000

ENSAMXG00000000147 (Astyanax mexicanus) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

317 Related TFs

ENSAMXG00000000147 **(Astyanax mexicanus)
Homeodomain**