ENSCING00000012311 (Ciona intestinalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCING00000012311 T207854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nkx6-1
M00466_2.00 		Mus musculus
NDTDATNRN
NYNATHAHN		 PBM
Berger et al.(2008)
Nkx6-1_2825 		0.865 0.965
NKX6-1
M09151_2.00 		Homo sapiens
RAHWRATKDSNWWWTRATD
HATYAWWWNSHMATYWDTY		 Misc
Kulakovskiy et al.(2013)
NKX61_HUMAN.H11MO.0.B 		0.865 0.965
Nkx6-1
M09200_2.00 		Mus musculus
HNWRATKDNHWWWTRATDR
YHATYAWWWDNHMATYWND		 Misc
Kulakovskiy et al.(2013)
NKX61_MOUSE.H11MO.0.A 		0.865 0.965
Nkx6-1
M09573_2.00 		Mus musculus
NDTAATKR
YMATTAHN		 Misc
Heinz et al.(2010)
Islet-Nkx6.1_GSE40975 		0.865 0.965
NKX6-1
M10718_2.00 		Homo sapiens
HWTTTAATKGRWT
AWYCMATTAAAWD		 Transfac
Matys et al.(2006)
V$NKX61_01 		0.865 0.965
NKX6-1
M10719_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX61_08 		0.865 0.965
Nkx6-3
M00522_2.00 		Mus musculus
NDYDATNRN
NYNATHRHN		 PBM
Berger et al.(2008)
Nkx6-3_3446 		0.865 0.930
NKX6-3
M05242_2.00 		Homo sapiens
NWTAATGRB
VYCATTAWN		 SELEX
Yin et al.(2017)
NKX6-3_eDBD_HT-SELEX 		0.865 0.930
NKX6-3
M05243_2.00 		Homo sapiens
DWTAATGRB
VYCATTAWH		 SELEX
Yin et al.(2017)
NKX6-3_eDBD_Methyl-HT-SELEX 		0.865 0.930
NKX6-2
M05184_2.00 		Homo sapiens
DTAATTRN
NYAATTAH		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_HT-SELEX 		0.856 0.947
NKX6-2
M05186_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_HT-SELEX 		0.856 0.947
NKX6-2
M10711_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX62_Q2 		0.856 0.947
NKX6-2
M05185_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_Methyl-HT-SELEX 		0.856 0.947
NKX6-2
M05187_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_Methyl-HT-SELEX 		0.856 0.947
HGTX
M03869_2.00 		Drosophila melanogaster
DTAATKRN
NYMATTAH		 SELEX
Nitta et al.(2015)
HGTX_1 		0.853 0.912
HGTX
M03870_2.00 		Drosophila melanogaster
DTAATKRN
NYMATTAH		 SELEX
Nitta et al.(2015)
HGTX_2 		0.853 0.912
HGTX
M06542_2.00 		Drosophila melanogaster
DTAATKA
TMATTAH		 B1H
Mathelier et al.(2014)
MA0191.1 		0.853 0.912
HGTX
M06360_2.00 		Drosophila melanogaster
DDTAATKA
TMATTAHH		 B1H
Zhu et al.(2011)
Hgtx_Cell_FBgn0040318 		0.853 0.912
HGTX
M06361_2.00 		Drosophila melanogaster
NWTAATKA
TMATTAWN		 B1H
Zhu et al.(2011)
Hgtx_SOLEXA_FBgn0040318 		0.853 0.912
CBG20882
M01244_2.00 		Caenorhabditis briggsae
NDHDATDRN
NYHATHDHN		 PBM
Lambert et al.(2019)
pTH11477 		0.811 0.719
Q0N4H9_NEMVE
M02165_2.00 		Nematostella vectensis
NNYRWWNNN
NNNWWYRNN		 PBM
Weirauch et al.(2014)
pTH6101 		0.683 0.561
NEMVEDRAFT_v1g129868
M02146_2.00 		Nematostella vectensis
NYRAWNDNN
NNHNWTYRN		 PBM
Weirauch et al.(2014)
pTH5749 		0.679 0.579
NK7.1
M03847_2.00 		Drosophila melanogaster
VTTAAAYGDTD
HAHCRTTTAAB		 SELEX
Nitta et al.(2015)
NK7.1_1 		0.617 0.614
NK7.1
M03848_2.00 		Drosophila melanogaster
NSTTAATTGVY
RBCAATTAASN		 SELEX
Nitta et al.(2015)
NK7.1_2 		0.617 0.614
NK7.1
M06524_2.00 		Drosophila melanogaster
TTAATDR
YHATTAA		 B1H
Mathelier et al.(2014)
MA0196.1 		0.617 0.614
NK7.1
M06323_2.00 		Drosophila melanogaster
NTTAATDR
YHATTAAN		 B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321 		0.617 0.614
NK7.1
M06324_2.00 		Drosophila melanogaster
YTAATDR
YHATTAR		 B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321 		0.617 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000023047 Homeodomain 144 200

Links

Other Homeodomain family TFs
Other Ciona intestinalis TFs

314 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Meis3 Mus musculus ENSMUSG00000041420 D 0.000
Tgif2 Mus musculus ENSMUSG00000062175 D 0.000
PKNOX1 Procavia capensis ENSPCAG00000016718 I 0.000
LDEC001304 Leptinotarsa decemlineata LDEC001304 I 0.000
CLEC025153 Cimex lectularius CLEC025153 I 0.000
Tal_R002601 Tyto alba Tal_R002601 I 0.000
Pvit_18888 Pogona vitticeps Pvit_18888 I 0.000
Brh_R013532 Buceros rhinoceros Brh_R013532 I 0.000
Aan_R012134 Calypte anna Aan_R012134 I 0.000
PHUM547170 Pediculus humanus PHUM547170 I 0.000
MEIS2 Taeniopygia guttata ENSTGUG00000011748 I 0.000
MEIS2 Sorex araneus ENSSARG00000006585 I 0.000
D917_09995 Trichinella nativa D917_09995 I 0.000
ENSPANG00000019600 Papio anubis ENSPANG00000019600 I 0.000
ENSMGAG00000015905 Meleagris gallopavo ENSMGAG00000015905 I 0.000
ENSMEUG00000003851 Macropus eugenii ENSMEUG00000003851 I 0.000
Pknox2 Dipodomys ordii ENSDORG00000008635 I 0.000
ENSCSAG00000007217 Chlorocebus sabaeus ENSCSAG00000007217 I 0.000
MEIS3 Callithrix jacchus ENSCJAG00000011475 I 0.000
PKNOX2 Choloepus hoffmanni ENSCHOG00000008048 I 0.000
SCUD_0001235001 Schistosoma curassoni SCUD_0001235001 N 0.000
SPER_0001318201 Spirometra erinaceieuropaei SPER_0001318201 N 0.000
nRc.2.0.1.g19666 Romanomermis culicivorax nRc.2.0.1.g19666 N 0.000
TTRE_0000256401 Trichuris trichiura TTRE_0000256401 N 0.000
TRE_0000372801 Trichobilharzia regenti TRE_0000372801 N 0.000
RO3G_00994 Rhizopus oryzae RO3G_00994 N 0.000
MCOS_0000352701 Mesocestoides corti MCOS_0000352701 N 0.000
DILT_0001314701 Diphyllobothrium latum DILT_0001314701 N 0.000
D918_09737 Trichuris suis D918_09737 N 0.000
ENSPSIG00000016694 Pelodiscus sinensis ENSPSIG00000016694 N 0.000
ENSPMAG00000005538 Petromyzon marinus ENSPMAG00000005538 N 0.000
CapteG139538 Capitella teleta CapteG139538 N 0.000