Hoxa13 (Mus musculus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMUSG00000038203 T212489_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxa13
M00473_2.00		 Mus musculus
NTTWAYDRN
NYHRTWAAN		 PBM
Berger et al.(2008)
Hoxa13_3126		 (Direct) (Direct)
Hoxa13
M09202_2.00		 Mus musculus
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HOXA13
M03098_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_1 		0.867 1.000
HOXA13
M03099_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_2 		0.867 1.000
HOXA13
M03100_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_3 		0.867 1.000
HOXA13
M03101_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_4 		0.867 1.000
HOXA13
M04977_2.00 		Homo sapiens
DTTTTATKGGB
VCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1 		0.867 1.000
HOXA13
M04978_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2 		0.867 1.000
HOXA13
M04981_2.00 		Homo sapiens
DTTTTATKRSN
NSYMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1 		0.867 1.000
HOXA13
M04982_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2 		0.867 1.000
HOXA13
M09134_2.00 		Homo sapiens
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C 		0.867 1.000
HOXA13
M10653_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_01 		0.867 1.000
HOXA13
M10654_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_02 		0.867 1.000
HOXA13
M04979_2.00 		Homo sapiens
DTTTTATTRSN
NSYAATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1 		0.867 1.000
HOXA13
M04980_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2 		0.867 1.000
HOXA13
M04983_2.00 		Homo sapiens
DKTTTATTGBN
NVCAATAAAMH		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1 		0.867 1.000
HOXA13
M04984_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2 		0.867 1.000
Hoxc13
M00389_2.00 		Mus musculus
NTTWAYDRNN
NNYHRTWAAN		 PBM
Berger et al.(2008)
Hoxc13_3127 		0.862 0.930
HOXC13
M03129_2.00 		Homo sapiens
NTTTTATTRS
SYAATAAAAN		 SELEX
Jolma et al.(2013)
HOXC13_1 		0.862 0.930
HOXC13
M03130_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXC13_2 		0.862 0.930
HOXC13
M05072_2.00 		Homo sapiens
RKTTTATKGSN
NSCMATAAAMY		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1 		0.862 0.930
HOXC13
M05073_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2 		0.862 0.930
HOXC13
M10680_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXC13_Q2 		0.862 0.930
HOXC13
M05074_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX 		0.862 0.930
hoxd13a
M02081_2.00 		Danio rerio
WTTTATDR
YHATAAAW		 PBM
Weirauch et al.(2014)
pTH6143 		0.836 0.842
HOXD13
M00299_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_REF 		0.834 0.895
Hoxd13
M00394_2.00 		Mus musculus
NWTHRYDDN
NHHRYDAWN		 PBM
Berger et al.(2008)
Hoxd13_2356 		0.834 0.895
HOXD13
M03141_2.00 		Homo sapiens
DTTTTATKRS
SYMATAAAAH		 SELEX
Jolma et al.(2013)
HOXD13_1 		0.834 0.895
HOXD13
M03142_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXD13_2 		0.834 0.895
Hoxd13
M03247_2.00 		Mus musculus
DKTTTATTRS
SYAATAAAMH		 SELEX
Jolma et al.(2013)
Hoxd13_1 		0.834 0.895
Hoxd13
M03248_2.00 		Mus musculus
DDTTTAYKAGN
NCTMRTAAAHH		 SELEX
Jolma et al.(2013)
Hoxd13_2 		0.834 0.895
HOXD13
M05122_2.00 		Homo sapiens
GKTTTATKGSS
SSCMATAAAMC		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1 		0.834 0.895
HOXD13
M05123_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2 		0.834 0.895
HOXD13
M10689_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD13_Q6 		0.834 0.895
HOXD13
M00295_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_N298S 		0.834 0.895
HOXD13
M05124_2.00 		Homo sapiens
DDTTTATTRBB
VVYAATAAAHH		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1 		0.834 0.895
HOXD13
M05125_2.00 		Homo sapiens
VCTCGTAAAAH
DTTTTACGAGB		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2 		0.834 0.895
HOXD13
M00300_2.00 		Homo sapiens
WTTTATDR
YHATAAAW		 PBM
Barrera et al.(2016)
HOXD13_S316C 		0.834 0.877
HOXD13
M00293_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_I297V 		0.834 0.877
HOXD13
M00298_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_R306W 		0.826 0.877
HOXD13
M00294_2.00 		Homo sapiens
THGTWAAW
WTTWACDA		 PBM
Barrera et al.(2016)
HOXD13_I322L 		0.816 0.877
HOXB13
M02092_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Weirauch et al.(2014)
pTH5808 		0.709 0.842
Hoxb13
M00505_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb13_3479 		0.709 0.842
HOXB13
M03175_2.00 		Homo sapiens
DTTTTATKGG
CCMATAAAAH		 SELEX
Jolma et al.(2013)
HOXB13_1 		0.709 0.842
HOXB13
M03176_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXB13_2 		0.709 0.842
HOXB13
M05201_2.00 		Homo sapiens
DTTTTATKGGN
NCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1 		0.709 0.842
HOXB13
M05202_2.00 		Homo sapiens
NCTCGTAAAHH
DDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2 		0.709 0.842
HOXB13
M09149_2.00 		Homo sapiens
TTTTATDRSN
NSYHATAAAA		 Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A 		0.709 0.842
HOXB13
M05203_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX 		0.709 0.842
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.611 0.544
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.611 0.544
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.611 0.544
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.611 0.544
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.611 0.544
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.611 0.544
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.611 0.544
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.611 0.544
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.611 0.544
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.611 0.544
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.611 0.544
HOXD13
M00296_2.00 		Homo sapiens
GKATAAAH
DTTTATMC		 PBM
Barrera et al.(2016)
HOXD13_Q325K 		0.601 0.877
HOXD13
M00297_2.00 		Homo sapiens
NWTWRKNNNN
NNNNMYWAWN		 PBM
Barrera et al.(2016)
HOXD13_Q325R 		0.601 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00473_2.00 Homeodomain 17 73

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000039170 Homeodomain 318 374
ENSMUSP00000110059 Homeodomain 154 210
ENSMUSP00000125221 Homeodomain 138 194

Links

Other Homeodomain family TFs
Other Mus musculus TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AQUA001539 Anopheles quadriannulatus AQUA001539 I 0.000
AARA010122 Anopheles arabiensis AARA010122 I 0.000
AATE000358 Anopheles atroparvus AATE000358 I 0.000
ACOM028768 Anopheles coluzzii ACOM028768 I 0.000
ACUA002309 Anopheles culicifacies ACUA002309 I 0.000
ADIR005346 Anopheles dirus ADIR005346 I 0.000
AEPI001628 Anopheles epiroticus AEPI001628 I 0.000
AFUN008965 Anopheles funestus AFUN008965 I 0.000
AMAM013972 Anopheles maculatus AMAM013972 I 0.000
AMEC022225 Anopheles melas AMEC022225 I 0.000
AMIN004030 Anopheles minimus AMIN004030 I 0.000
XP_002156512.1 Hydra magnipapillata XP_002156512.1 I 0.000
ASIS004744 Anopheles sinensis ASIS004744 I 0.000
ASTEI07436 Anopheles stephensi ASTEI07436 I 0.000
HmN_000028800 Hymenolepis microstoma HmN_000028800 I 0.000
HNAJ_0001184001 Hymenolepis nana HNAJ_0001184001 I 0.000
maker-nMf.1.1.scaf01203-snap-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf01203-snap-gene-0.7 I 0.000
nAv.1.0.1.g02987 Acanthocheilonema viteae nAv.1.0.1.g02987 I 0.000
nAv.1.0.1.g03500 Acanthocheilonema viteae nAv.1.0.1.g03500 I 0.000
nAv.1.0.1.g04155 Acanthocheilonema viteae nAv.1.0.1.g04155 I 0.000
nAv.1.0.1.g09237 Acanthocheilonema viteae nAv.1.0.1.g09237 I 0.000
RSKR_0000979300 Rhabditophanes kr3021 RSKR_0000979300 I 0.000
HMEL006180 Heliconius melpomene HMEL006180 I 0.000
AAEL006595 Aedes aegypti AAEL006595 I 0.000
ADAC007060 Anopheles darlingi ADAC007060 I 0.000
AGAP003670 Anopheles gambiae AGAP003670 I 0.000
BGIBMGA010704 Bombyx mori BGIBMGA010704 I 0.000
CJA11788 Caenorhabditis japonica CJA11788 I 0.000
CPIJ004108 Culex quinquefasciatus CPIJ004108 I 0.000
HelroG148581 Helobdella robusta HelroG148581 I 0.000
HelroG74887 Helobdella robusta HelroG74887 I 0.000
CpipJ_CPIJ004108 Culex pipiens CpipJ_CPIJ004108 I 0.000
KGM_11243 Danaus plexippus KGM_11243 I 0.000
MCINX004874 Melitaea cinxia MCINX004874 I 0.000
NEMVEDRAFT_v1g192469 Nematostella vectensis NEMVEDRAFT_v1g192469 I 0.000
RPRC006183 Rhodnius prolixus RPRC006183 I 0.000
SMAR005028 Strigamia maritima SMAR005028 I 0.000
TriadG9507 Trichoplax adhaerens TriadG9507 I 0.000
SMU15028449 Schmidtea mediterranea SMU15028449 I 0.000
SMU15038697 Schmidtea mediterranea SMU15038697 I 0.000
Minc14337 Meloidogyne incognita Minc14337 I 0.000
HDID_0000431201 Hymenolepis diminuta HDID_0000431201 N 0.000
HelroG148517 Helobdella robusta HelroG148517 N 0.000
TriadG9531 Trichoplax adhaerens TriadG9531 N 0.000
ACYPI20510 Acyrthosiphon pisum ACYPI20510 N 0.000