SIX6 (Procavia capensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPCAG00000001296 T214198_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000001178 Homeodomain 180 236

Links

Other Homeodomain family TFs
Other Procavia capensis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PLEOSDRAFT_1092752 Pleurotus ostreatus PLEOSDRAFT_1092752 N
M408DRAFT_74184 Serendipita vermifera M408DRAFT_74184 N
M413DRAFT_441255 Hebeloma cylindrosporum M413DRAFT_441255 N
Moror_7350 Moniliophthora roreri Moror_7350 N
MVLG_01921 Microbotryum violaceum MVLG_01921 N
PHACADRAFT_249271 Phanerochaete carnosa PHACADRAFT_249271 N
PHLGIDRAFT_221070 Phlebiopsis gigantea PHLGIDRAFT_221070 N
PIIN_03898 Piriformospora indica PIIN_03898 N
PILCRDRAFT_148646 Piloderma croceum PILCRDRAFT_148646 N
PISMIDRAFT_670789 Pisolithus microcarpus PISMIDRAFT_670789 N
M407DRAFT_66269 Tulasnella calospora M407DRAFT_66269 N
POSPLDRAFT_96125 Postia placenta POSPLDRAFT_96125 N
RHTO_03592 Rhodosporidium toruloides RHTO_03592 N
RTG_00886 Rhodotorula glutinis RTG_00886 N
SCHCODRAFT_254923 Schizophyllum commune SCHCODRAFT_254923 N
SCLCIDRAFT_138221 Scleroderma citrinum SCLCIDRAFT_138221 N
SERLA73DRAFT_177482 Serpula lacrymans SERLA73DRAFT_177482 N
fgenesh1_pg.C_scaffold_2000749 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_2000749 N
estExt_fgenesh3_kg.C_40166 Heterobasidion annosum estExt_fgenesh3_kg.C_40166 N
GALMADRAFT_133154 Galerina marginata GALMADRAFT_133154 N
AGABI2DRAFT_191870 Agaricus bisporus AGABI2DRAFT_191870 N
BN946_scf184858.g52 Trametes cinnabarina BN946_scf184858.g52 N
CC1G_14628 Coprinopsis cinerea CC1G_14628 N
CERSUDRAFT_80362 Ceriporiopsis subvermispora CERSUDRAFT_80362 N
CNA04400 Cryptococcus neoformans CNA04400 N
CY34DRAFT_797697 Suillus luteus CY34DRAFT_797697 N
DACRYDRAFT_39315 Dacryopinax sp DACRYDRAFT_39315 N
DICSQDRAFT_61110 Dichomitus squalens DICSQDRAFT_61110 N
FOMPIDRAFT_1062771 Fomitopsis pinicola FOMPIDRAFT_1062771 N
A1Q1_03604 Trichosporon asahii A1Q1_03604 N
GLOTRDRAFT_136174 Gloeophyllum trabeum GLOTRDRAFT_136174 N
HETIRDRAFT_313274 Heterobasidion irregulare HETIRDRAFT_313274 N
JAAARDRAFT_145306 Jaapia argillacea JAAARDRAFT_145306 N
K443DRAFT_88561 Laccaria amethystina K443DRAFT_88561 N
L804_02024 Cryptococcus gattii L804_02024 N
LACBIDRAFT_311793 Laccaria bicolor LACBIDRAFT_311793 N
M378DRAFT_67363 Amanita muscaria M378DRAFT_67363 N
M404DRAFT_19643 Pisolithus tinctorius M404DRAFT_19643 N