CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSPPYG00000012956 *(Pongo abelii)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSPPYG00000012956	T214742_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HOXD13 M00299_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_REF	0.867	1.000
Hoxd13 M00394_2.00	Mus musculus	NWTHRYDDN	NHHRYDAWN	PBM Berger et al.(2008) Hoxd13_2356	0.867	1.000
HOXD13 M03141_2.00	Homo sapiens	DTTTTATKRS	SYMATAAAAH	SELEX Jolma et al.(2013) HOXD13_1	0.867	1.000
HOXD13 M03142_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXD13_2	0.867	1.000
Hoxd13 M03247_2.00	Mus musculus	DKTTTATTRS	SYAATAAAMH	SELEX Jolma et al.(2013) Hoxd13_1	0.867	1.000
Hoxd13 M03248_2.00	Mus musculus	DDTTTAYKAGN	NCTMRTAAAHH	SELEX Jolma et al.(2013) Hoxd13_2	0.867	1.000
HOXD13 M05122_2.00	Homo sapiens	GKTTTATKGSS	SSCMATAAAMC	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_1	0.867	1.000
HOXD13 M05123_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_2	0.867	1.000
HOXD13 M10689_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD13_Q6	0.867	1.000
HOXD13 M05124_2.00	Homo sapiens	DDTTTATTRBB	VVYAATAAAHH	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_1	0.867	1.000
HOXD13 M05125_2.00	Homo sapiens	VCTCGTAAAAH	DTTTTACGAGB	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_2	0.867	1.000
HOXD13 M00295_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_N298S	0.867	0.982
HOXD13 M00300_2.00	Homo sapiens	WTTTATDR	YHATAAAW	PBM Barrera et al.(2016) HOXD13_S316C	0.867	0.982
HOXD13 M00293_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Barrera et al.(2016) HOXD13_I297V	0.866	0.982
HOXD13 M00298_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_R306W	0.859	0.982
HOXD13 M00294_2.00	Homo sapiens	THGTWAAW	WTTWACDA	PBM Barrera et al.(2016) HOXD13_I322L	0.849	0.982
hoxd13a M02081_2.00	Danio rerio	WTTTATDR	YHATAAAW	PBM Weirauch et al.(2014) pTH6143	0.848	0.807
Hoxa13 M00473_2.00	Mus musculus	NTTWAYDRN	NYHRTWAAN	PBM Berger et al.(2008) Hoxa13_3126	0.834	0.895
HOXA13 M03098_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_1	0.834	0.895
HOXA13 M03099_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_2	0.834	0.895
HOXA13 M03100_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_3	0.834	0.895
HOXA13 M03101_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_4	0.834	0.895
HOXA13 M04977_2.00	Homo sapiens	DTTTTATKGGB	VCCMATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_1	0.834	0.895
HOXA13 M04978_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_2	0.834	0.895
HOXA13 M04981_2.00	Homo sapiens	DTTTTATKRSN	NSYMATAAAAH	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_1	0.834	0.895
HOXA13 M04982_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_2	0.834	0.895
HOXA13 M09134_2.00	Homo sapiens	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_HUMAN.H11MO.0.C	0.834	0.895
Hoxa13 M09202_2.00	Mus musculus	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_MOUSE.H11MO.0.C	0.834	0.895
HOXA13 M10653_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_01	0.834	0.895
HOXA13 M10654_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_02	0.834	0.895
HOXA13 M04979_2.00	Homo sapiens	DTTTTATTRSN	NSYAATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_1	0.834	0.895
HOXA13 M04980_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_2	0.834	0.895
HOXA13 M04983_2.00	Homo sapiens	DKTTTATTGBN	NVCAATAAAMH	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_1	0.834	0.895
HOXA13 M04984_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_2	0.834	0.895
Hoxc13 M00389_2.00	Mus musculus	NTTWAYDRNN	NNYHRTWAAN	PBM Berger et al.(2008) Hoxc13_3127	0.834	0.860
HOXC13 M03129_2.00	Homo sapiens	NTTTTATTRS	SYAATAAAAN	SELEX Jolma et al.(2013) HOXC13_1	0.834	0.860
HOXC13 M03130_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXC13_2	0.834	0.860
HOXC13 M05072_2.00	Homo sapiens	RKTTTATKGSN	NSCMATAAAMY	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_1	0.834	0.860
HOXC13 M05073_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_2	0.834	0.860
HOXC13 M10680_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXC13_Q2	0.834	0.860
HOXC13 M05074_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_Methyl-HT-SELEX	0.834	0.860
HOXB13 M02092_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Weirauch et al.(2014) pTH5808	0.704	0.807
Hoxb13 M00505_2.00	Mus musculus	NTTWAYDDNN	NNHHRTWAAN	PBM Berger et al.(2008) Hoxb13_3479	0.704	0.807
HOXB13 M03175_2.00	Homo sapiens	DTTTTATKGG	CCMATAAAAH	SELEX Jolma et al.(2013) HOXB13_1	0.704	0.807
HOXB13 M03176_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXB13_2	0.704	0.807
HOXB13 M05201_2.00	Homo sapiens	DTTTTATKGGN	NCCMATAAAAH	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_1	0.704	0.807
HOXB13 M05202_2.00	Homo sapiens	NCTCGTAAAHH	DDTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_2	0.704	0.807
HOXB13 M09149_2.00	Homo sapiens	TTTTATDRSN	NSYHATAAAA	Misc Kulakovskiy et al.(2013) HXB13_HUMAN.H11MO.0.A	0.704	0.807
HOXB13 M05203_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_Methyl-HT-SELEX	0.704	0.807
HOXD13 M00296_2.00	Homo sapiens	GKATAAAH	DTTTATMC	PBM Barrera et al.(2016) HOXD13_Q325K	0.633	0.982
HOXD13 M00297_2.00	Homo sapiens	NWTWRKNNNN	NNNNMYWAWN	PBM Barrera et al.(2016) HOXD13_Q325R	0.633	0.982
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSPPYP00000014468	Homeodomain	277	333	RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK

Links
Other Homeodomain family TFs
Other *Pongo abelii* TFs

266 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
KMT2B	Callithrix jacchus	ENSCJAG00000010126	I	0.000
ENSXMAG00000015008	Xiphophorus maculatus	ENSXMAG00000015008	I	0.000
ENSPFOG00000008123	Poecilia formosa	ENSPFOG00000008123	I	0.000
Kmt2b	Rattus norvegicus	ENSRNOG00000055525	N	0.000
ENSNLEG00000011306	Nomascus leucogenys	ENSNLEG00000011306	N	0.000
ENSOARG00000004987	Ovis aries	ENSOARG00000004987	N	0.000
KMT2B	Oryctolagus cuniculus	ENSOCUG00000012768	N	0.000
KMT2B	Otolemur garnettii	ENSOGAG00000004157	N	0.000
KMT2B	Ochotona princeps	ENSOPRG00000001336	N	0.000
ENSPANG00000007179	Papio anubis	ENSPANG00000007179	N	0.000
KMT2B	Procavia capensis	ENSPCAG00000004566	N	0.000
ENSPPYG00000009877	Pongo abelii	ENSPPYG00000009877	N	0.000
KMT2B	Pan troglodytes	ENSPTRG00000010858	N	0.000
KMT2B	Pteropus vampyrus	ENSPVAG00000012828	N	0.000
Kmt2b	Mus musculus	ENSMUSG00000006307	N	0.000
ENSSSCG00000002895	Sus scrofa	ENSSSCG00000002895	N	0.000
ENSSTOG00000027453	Ictidomys tridecemlineatus	ENSSTOG00000027453	N	0.000
KMT2B	Tupaia belangeri	ENSTBEG00000007263	N	0.000
KMT2B	Tursiops truncatus	ENSTTRG00000002243	N	0.000
Alligator_sinensis_CCG001547.1	Alligator sinensis	Alligator_sinensis_CCG001547.1	N	0.000
ENSP00000398837	Macaca fascicularis	ENSP00000398837	N	0.000
Myotis_brandtii_WBP7_10035154	Myotis brandtii	Myotis_brandtii_WBP7_10035154	N	0.000
Ogr13647	Ophisaurus gracilis	Ogr13647	N	0.000
Pvit_00563	Pogona vitticeps	Pvit_00563	N	0.000
KMT2B	Homo sapiens	ENSG00000272333	N	0.000
ENSAMEG00000000319	Ailuropoda melanoleuca	ENSAMEG00000000319	N	0.000
KMT2B	Bos taurus	ENSBTAG00000002763	N	0.000
KMT2B	Canis familiaris	ENSCAFG00000006878	N	0.000
KMT2B	Cavia porcellus	ENSCPOG00000003718	N	0.000
ENSCSAG00000004387	Chlorocebus sabaeus	ENSCSAG00000004387	N	0.000
KMT2B	Dasypus novemcinctus	ENSDNOG00000005517	N	0.000
Kmt2b	Dipodomys ordii	ENSDORG00000009061	N	0.000
ENSECAG00000007605	Equus caballus	ENSECAG00000007605	N	0.000
KMT2B	Erinaceus europaeus	ENSEEUG00000013250	N	0.000
KMT2B	Felis catus	ENSFCAG00000006381	N	0.000
KMT2B	Anolis carolinensis	ENSACAG00000016679	N	0.000
ENSGACG00000004248	Gasterosteus aculeatus	ENSGACG00000004248	N	0.000
KMT2B	Gorilla gorilla	ENSGGOG00000016796	N	0.000
KMT2B	Loxodonta africana	ENSLAFG00000018741	N	0.000
ENSLOCG00000004031	Lepisosteus oculatus	ENSLOCG00000004031	N	0.000
ENSMEUG00000014580	Macropus eugenii	ENSMEUG00000014580	N	0.000
KMT2B	Microcebus murinus	ENSMICG00000009928	N	0.000
KMT2B	Myotis lucifugus	ENSMLUG00000011406	N	0.000
KMT2B	Macaca mulatta	ENSMMUG00000002381	N	0.000
KMT2B	Monodelphis domestica	ENSMODG00000013994	N	0.000
ENSMPUG00000006206	Mustela putorius furo	ENSMPUG00000006206	N	0.000

ENSPPYG00000012956 (Pongo abelii) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

266 Related TFs

ENSPPYG00000012956 **(Pongo abelii)
Homeodomain**