CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSPSIG00000009557 *(Pelodiscus sinensis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSPSIG00000009557	T214912_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Dbx2 M00499_2.00	Mus musculus	NNDTNNN	NNNAHNN	PBM Berger et al.(2008) Dbx2_3487	0.853	0.911
Dbx1 M00451_2.00	Mus musculus	WTTAATTA	TAATTAAW	PBM Berger et al.(2008) Dbx1_3486	0.829	0.857
Dbx M02128_2.00	Drosophila melanogaster	WTTAATTA	TAATTAAW	PBM Weirauch et al.(2014) pTH6051	0.792	0.804
Dbx M06550_2.00	Drosophila melanogaster	TTWATKA	TMATWAA	B1H Mathelier et al.(2014) MA0174.1	0.792	0.804
Hlx M00485_2.00	Mus musculus	NNNAWND	HNWTNNN	PBM Berger et al.(2008) Hlx1_2350	0.711	0.643
H2.0 M06489_2.00	Drosophila melanogaster	WTWATDA	THATWAW	B1H Mathelier et al.(2014) MA0448.1	0.710	0.643
H2.0 M06250_2.00	Drosophila melanogaster	TWWWWDA	THAWWWA	B1H Zhu et al.(2011) H2.0_Cell_FBgn0001170	0.710	0.643
H2.0 M06251_2.00	Drosophila melanogaster	WTWATTRN	NYAATWAW	B1H Zhu et al.(2011) H2.0_SOLEXA_FBgn0001170	0.710	0.643
Nkx3-1 M00170_2.00	Mus musculus	NDAAGTRBNN	NNVYACTTHN	PBM Badis et al.(2009) Nkx3-1_2923	0.600	0.536
Nkx3-1 M00420_2.00	Mus musculus	NNAAGTRBNN	NNVYACTTNN	PBM Berger et al.(2008) Nkx3-1_2923	0.600	0.536
NKX3-1 M05255_2.00	Homo sapiens	NNTAAGTGSN	NSCACTTANN	SELEX Yin et al.(2017) NKX3-1_eDBD_HT-SELEX	0.600	0.536
NKX3-1 M09154_2.00	Homo sapiens	NYDAAGTGBYWD	HWRVCACTTHRN	Misc Kulakovskiy et al.(2013) NKX31_HUMAN.H11MO.0.C	0.600	0.536
Nkx3-1 M09184_2.00	Mus musculus	NYDAAGTGBYWD	HWRVCACTTHRN	Misc Kulakovskiy et al.(2013) NKX31_MOUSE.H11MO.0.C	0.600	0.536
NKX3-1 M09559_2.00	Homo sapiens	BTRAGTRBYY	RRVYACTYAV	Misc Heinz et al.(2010) LNCaP-Nkx3.1_GSE28264	0.600	0.536
NKX3-1 M10729_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$GT1_Q6_01	0.600	0.536
NKX3-1 M10730_2.00	Homo sapiens	NWWTAAGTATWH	DWATACTTAWWN	Transfac Matys et al.(2006) V$NKX3A_01	0.600	0.536
NKX3-1 M10731_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX3A_Q3	0.600	0.536
NKX3-1 M05256_2.00	Homo sapiens	NNTAAGTGBN	NVCACTTANN	SELEX Yin et al.(2017) NKX3-1_eDBD_Methyl-HT-SELEX_1	0.600	0.536
NKX3-1 M05257_2.00	Homo sapiens	NTAAYSWB	VWSRTTAN	SELEX Yin et al.(2017) NKX3-1_eDBD_Methyl-HT-SELEX_2	0.600	0.536
For this family, TFs with SR scores > 0.599* will likely have a similar motif*