ENSXMAG00000015988 (Xiphophorus maculatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSXMAG00000015988 T217258_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.867 1.000
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.947
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.947
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.947
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.947
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.947
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.947
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.930
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000016019 Homeodomain 170 226

Links

Other Homeodomain family TFs
Other Xiphophorus maculatus TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Tead4 Mus musculus ENSMUSG00000030353 D
TEAD3 Homo sapiens ENSG00000007866 D
TEAD4 Homo sapiens ENSG00000197905 D
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
ENSPFOG00000003170 Poecilia formosa ENSPFOG00000003170 I
ENSPSIG00000006176 Pelodiscus sinensis ENSPSIG00000006176 I
tead1a Takifugu rubripes ENSTRUG00000005940 I
tead3a Takifugu rubripes ENSTRUG00000011546 I
TEAD3 Tursiops truncatus ENSTTRG00000009434 I
NEMVEDRAFT_v1g86806 Nematostella vectensis NEMVEDRAFT_v1g86806 I
SMAR011013 Strigamia maritima SMAR011013 I
egl-44 Caenorhabditis elegans WBGene00001208 I
Pvit_05988 Pogona vitticeps Pvit_05988 I
ENSONIG00000011013 Oreochromis niloticus ENSONIG00000011013 I
HHAL001589-PA Halyomorpha halys HHAL001589-PA I
ACHR008952 Anopheles christyi ACHR008952 I
AEPI008594 Anopheles epiroticus AEPI008594 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
D917_06432 Trichinella nativa D917_06432 I
ECANG7_01760 Echinococcus canadensis ECANG7_01760 I
OFLC_0000413701 Onchocerca flexuosa OFLC_0000413701 I
TsM_000210300 Taenia solium TsM_000210300 I
ENSGALG00000000953 Gallus gallus ENSGALG00000000953 I
Bm11328 Brugia malayi Bm11328 I
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
TEAD3 Canis familiaris ENSCAFG00000001326 I
ENSCING00000019408 Ciona intestinalis ENSCING00000019408 I
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I
tead1a Danio rerio ENSDARG00000028159 I
tead1b Danio rerio ENSDARG00000059483 I
TEAD3 Equus caballus ENSECAG00000015056 I
TEAD4 Oryzias latipes ENSORLG00000002553 I
TEAD3 Gorilla gorilla ENSGGOG00000001847 I
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I
TEAD3 Loxodonta africana ENSLAFG00000014818 I
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I
TEAD3 Microcebus murinus ENSMICG00000000029 I
ENSOARG00000012126 Ovis aries ENSOARG00000012126 I
TEAD3 Otolemur garnettii ENSOGAG00000002943 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
ENSLACG00000016717 Latimeria chalumnae ENSLACG00000016717 N
D918_02240 Trichuris suis D918_02240 N