ATHB-1 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 fgenesh2_kg.3__78__AT3G01470.1 T218464_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.867 0.982
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.867 0.982
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.867 0.982
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.867 0.982
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.813 0.807
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.813 0.789
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.813 0.772
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.813 0.772
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.813 0.772
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.796 0.754
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.796 0.754
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.796 0.754
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.796 0.754
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.796 0.754
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.796 0.754
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.723 0.649
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.723 0.649
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.722 0.667
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.722 0.667
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.718 0.649
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.718 0.649
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.657 0.789
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.657 0.789
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.637 0.754
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.637 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__78__AT3G01470.1 Homeodomain 64 120

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

801 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
THAP3 Pteropus vampyrus ENSPVAG00000013024 N 0.000
ENSOARG00000011230 Ovis aries ENSOARG00000011230 N 0.000
THAP3 Oryctolagus cuniculus ENSOCUG00000008846 N 0.000
THAP3 Otolemur garnettii ENSOGAG00000029491 N 0.000
THAP3 Ochotona princeps ENSOPRG00000001961 N 0.000
ENSPANG00000000281 Papio anubis ENSPANG00000000281 N 0.000
ENSPPYG00000001935 Pongo abelii ENSPPYG00000001935 N 0.000
ENSPSIG00000004751 Pelodiscus sinensis ENSPSIG00000004751 N 0.000
THAP3 Pan troglodytes ENSPTRG00000000093 N 0.000
ENSOANG00000029971 Ornithorhynchus anatinus ENSOANG00000029971 N 0.000
Thap3 Rattus norvegicus ENSRNOG00000026840 N 0.000
ENSSHAG00000008023 Sarcophilus harrisii ENSSHAG00000008023 N 0.000
ENSSSCG00000003378 Sus scrofa ENSSSCG00000003378 N 0.000
ENSSTOG00000003655 Ictidomys tridecemlineatus ENSSTOG00000003655 N 0.000
THAP3 Tursiops truncatus ENSTTRG00000006348 N 0.000
ENSBTAP00000014893-D1 Bos grunniens ENSBTAP00000014893-D1 N 0.000
ENSP00000383703 Macaca fascicularis ENSP00000383703 N 0.000
Myotis_brandtii_THAP3_10024041 Myotis brandtii Myotis_brandtii_THAP3_10024041 N 0.000
THAP3 Felis catus ENSFCAG00000000662 N 0.000
THAP3 Bos taurus ENSBTAG00000011214 N 0.000
THAP3 Canis familiaris ENSCAFG00000019625 N 0.000
THAP3 Callithrix jacchus ENSCJAG00000000237 N 0.000
THAP3 Cavia porcellus ENSCPOG00000021946 N 0.000
ENSCSAG00000000749 Chlorocebus sabaeus ENSCSAG00000000749 N 0.000
THAP3 Dasypus novemcinctus ENSDNOG00000013851 N 0.000
THAP3 Equus caballus ENSECAG00000009778 N 0.000
THAP3 Erinaceus europaeus ENSEEUG00000003448 N 0.000
ENSAMEG00000009609 Ailuropoda melanoleuca ENSAMEG00000009609 N 0.000
THAP3 Homo sapiens ENSG00000041988 N 0.000
ENSGGOG00000006842 Gorilla gorilla ENSGGOG00000006842 N 0.000
ENSLACG00000015746 Latimeria chalumnae ENSLACG00000015746 N 0.000
THAP3 Loxodonta africana ENSLAFG00000015981 N 0.000
THAP3 Myotis lucifugus ENSMLUG00000029196 N 0.000
THAP3 Macaca mulatta ENSMMUG00000002047 N 0.000
THAP3 Monodelphis domestica ENSMODG00000005922 N 0.000
Thap3 Mus musculus ENSMUSG00000039759 N 0.000