HelroG89655 (Helobdella robusta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 HelroG89655 T219529_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.852 0.855
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.852 0.855
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.852 0.855
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.852 0.855
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.852 0.855
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.852 0.855
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.852 0.855
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.852 0.855
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.851 0.818
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.851 0.818
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.851 0.818
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.851 0.818
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.851 0.818
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.851 0.818
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.851 0.818
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.851 0.818
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.851 0.818
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.851 0.818
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.851 0.818
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.851 0.818
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.851 0.818
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.851 0.818
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.851 0.818
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.851 0.818
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.851 0.818
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.851 0.818
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.706 0.691
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.706 0.691
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.706 0.691
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.706 0.691
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.706 0.691
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.706 0.655
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.706 0.655
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.706 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.706 0.655
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.706 0.655
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.706 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.706 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.706 0.655
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.706 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.662 0.582
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HelroP89655 Homeodomain 123 177

Links

Other Homeodomain family TFs
Other Helobdella robusta TFs

539 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIUR3_17772 Triticum urartu TRIUR3_17772 N
Sb10g030250 Sorghum bicolor Sb10g030250 N
Si007107m.g Setaria italica Si007107m.g N
Si037105m.g Setaria italica Si037105m.g N
TCM_042360 Theobroma cacao TCM_042360 N
Traes_5AS_6F02C9967 Triticum aestivum Traes_5AS_6F02C9967 N
Traes_5BS_FC54F9BEA Triticum aestivum Traes_5BS_FC54F9BEA N
Traes_5DS_4F7973584 Triticum aestivum Traes_5DS_4F7973584 N
Traes_7AL_C7CF7087B Triticum aestivum Traes_7AL_C7CF7087B N
Traes_7DL_70D4FDB2A Triticum aestivum Traes_7DL_70D4FDB2A N
Traes_7DL_7DDA16622 Triticum aestivum Traes_7DL_7DDA16622 N
TRIUR3_01653 Triticum urartu TRIUR3_01653 N
TRIUR3_12850 Triticum urartu TRIUR3_12850 N
POPTR_0003s20320 Populus trichocarpa POPTR_0003s20320 N
TRIUR3_23486 Triticum urartu TRIUR3_23486 N
ATBZIP24 Vitis vinifera VIT_13s0158g00380 N
gw1.34.187.1 Physcomitrella patens gw1.34.187.1 N
MDP0000190186 Malus domestica MDP0000190186 N
MDP0000893802 Malus domestica MDP0000893802 N
MDP0000898701 Malus domestica MDP0000898701 N
Pavir.Db00007 Panicum virgatum Pavir.Db00007 N
Pavir.J05283 Panicum virgatum Pavir.J05283 N
Pavir.J21984 Panicum virgatum Pavir.J21984 N
Pavir.J25286 Panicum virgatum Pavir.J25286 N
SapurV1A.0009s0600 Salix purpurea SapurV1A.0009s0600 N
SapurV1A.0445s0220 Salix purpurea SapurV1A.0445s0220 N
OBART11G02390 Oryza barthii OBART11G02390 N
BGIOSGA034759 Oryza indica BGIOSGA034759 N
BRADI1G30140 Brachypodium distachyon BRADI1G30140 N
F775_08202 Aegilops tauschii F775_08202 N
F775_17323 Aegilops tauschii F775_17323 N
F775_29696 Aegilops tauschii F775_29696 N
GLYMA11G16050 Glycine max GLYMA11G16050 N
GRMZM2G000171 Zea mays GRMZM2G000171 N
GRMZM2G055413 Zea mays GRMZM2G055413 N
LPERR06G23100 Leersia perrieri LPERR06G23100 N
MLOC_60894 Hordeum vulgare MLOC_60894 N
OB06G35370 Oryza brachyantha OB06G35370 N
OBART06G27540 Oryza barthii OBART06G27540 N
BGIOSGA020526 Oryza indica BGIOSGA020526 N
OGLUM06G28970 Oryza glumaepatula OGLUM06G28970 N
OLONG_023558 Oryza longistaminata OLONG_023558 N
OMERI06G27590 Oryza meridionalis OMERI06G27590 N
OMERI12G01070 Oryza meridionalis OMERI12G01070 N
ONIVA06G30110 Oryza nivara ONIVA06G30110 N
OPUNC06G25210 Oryza punctata OPUNC06G25210 N
OPUNC12G02170 Oryza punctata OPUNC12G02170 N
ORGLA06G0232500 Oryza glaberrima ORGLA06G0232500 N
ORUFI06G29500 Oryza rufipogon ORUFI06G29500 N
OS06G0716800 Oryza sativa OS06G0716800 N
OS11G0139500 Oryza sativa OS11G0139500 N
POPTR_0001s05750 Populus trichocarpa POPTR_0001s05750 N