LotgiG70438 (Lottia gigantea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 LotgiG70438 T220160_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
prd-b
M02077_2.00 		Ciona intestinalis
NTRATTRNN
NNYAATYAN		 PBM
Weirauch et al.(2014)
pTH6284 		0.635 0.439
en
M03793_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
en_1 		0.628 0.404
en
M06485_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0220.1 		0.628 0.404
inv
M06491_2.00 		Drosophila melanogaster
DYTAATTR
YAATTARH		 B1H
Mathelier et al.(2014)
MA0229.1 		0.628 0.404
en
M06236_2.00 		Drosophila melanogaster
NYTAATTR
YAATTARN		 B1H
Zhu et al.(2011)
En_Cell_FBgn0000577 		0.628 0.404
en
M06237_2.00 		Drosophila melanogaster
DBTAATKR
YMATTAVH		 B1H
Zhu et al.(2011)
en_FlyReg_FBgn0000577 		0.628 0.404
en
M06238_2.00 		Drosophila melanogaster
NNNTAATTRN
NYAATTANNN		 B1H
Zhu et al.(2011)
en_SOLEXA_2_FBgn0000577 		0.628 0.404
en
M06239_2.00 		Drosophila melanogaster
NTAATTR
YAATTAN		 B1H
Zhu et al.(2011)
En_SOLEXA_FBgn0000577 		0.628 0.404
inv
M06255_2.00 		Drosophila melanogaster
DYTAATTR
YAATTARH		 B1H
Zhu et al.(2011)
Inv_Cell_FBgn0001269 		0.628 0.404
inv
M06256_2.00 		Drosophila melanogaster
NHTAATTRV
BYAATTADN		 B1H
Zhu et al.(2011)
inv_SOLEXA_2_FBgn0001269 		0.628 0.404
inv
M06257_2.00 		Drosophila melanogaster
NHTAATTRV
BYAATTADN		 B1H
Zhu et al.(2011)
inv_SOLEXA_5_FBgn0001269 		0.628 0.404
en
M09677_2.00 		Drosophila melanogaster
HTAATTRN
NYAATTAD		 Misc
Kulakovskiy et al.(2009)
en 		0.628 0.404
en
M10785_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$EN_Q6 		0.628 0.404
En2
M00484_2.00 		Mus musculus
NNYHATHN
NDATDRNN		 PBM
Berger et al.(2008)
En2_0952 		0.627 0.351
En1
M00519_2.00 		Mus musculus
HNWTNNN
NNNAWND		 PBM
Berger et al.(2008)
En1_3123 		0.627 0.351
EN1
M03180_2.00 		Homo sapiens
NNTAATTRVB
VBYAATTANN		 SELEX
Jolma et al.(2013)
EN1_1 		0.627 0.351
EN1
M03181_2.00 		Homo sapiens
TAATTRSNYAATTA
TAATTRNSYAATTA		 SELEX
Jolma et al.(2013)
EN1_2 		0.627 0.351
EN1
M03182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
EN1_3 		0.627 0.351
EN1
M03183_2.00 		Homo sapiens
TDAKKRSNYMATTA
TAATKRNSYMMTHA		 SELEX
Jolma et al.(2013)
EN1_4 		0.627 0.351
EN2
M03189_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
EN2_1 		0.627 0.351
EN2
M03190_2.00 		Homo sapiens
VBTAATTRNN
NNYAATTAVB		 SELEX
Jolma et al.(2013)
EN2_2 		0.627 0.351
En2
M03276_2.00 		Mus musculus
VBTAATTASN
NSTAATTAVB		 SELEX
Jolma et al.(2013)
En2_1 		0.627 0.351
EN1
M05218_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
EN1_eDBD_HT-SELEX 		0.627 0.351
EN2
M05237_2.00 		Homo sapiens
BTAATTRV
BYAATTAV		 SELEX
Yin et al.(2017)
EN2_eDBD_HT-SELEX 		0.627 0.351
EN1
M05871_2.00 		Homo sapiens
VNYAATTA
TAATTRNB		 SMiLE-seq
Isakova et al.(2017)
EN1 		0.627 0.351
EN1
M10714_2.00 		Homo sapiens
RTDDTBB
VVAHHAY		 Transfac
Matys et al.(2006)
V$EN1_01 		0.627 0.351
EN1
M05219_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
EN1_eDBD_Methyl-HT-SELEX_1 		0.627 0.351
EN1
M05220_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
EN1_eDBD_Methyl-HT-SELEX_2 		0.627 0.351
EN2
M05238_2.00 		Homo sapiens
VHTDAYGHB
VDCRTHADB		 SELEX
Yin et al.(2017)
EN2_eDBD_Methyl-HT-SELEX_1 		0.627 0.351
EN2
M05239_2.00 		Homo sapiens
BTAATTRV
BYAATTAV		 SELEX
Yin et al.(2017)
EN2_eDBD_Methyl-HT-SELEX_2 		0.627 0.351
ENSTNIG00000017092
M02109_2.00 		Tetraodon nigroviridis
YYAATCAD
HTGATTRR		 PBM
Weirauch et al.(2014)
pTH6064 		0.624 0.386
HOXC4
M00330_2.00 		Homo sapiens
YTAATTRB
VYAATTAR		 PBM
Barrera et al.(2016)
HOXC4_REF 		0.605 0.421
Hoxa4
M00383_2.00 		Mus musculus
NTAATBDNN
NNHVATTAN		 PBM
Berger et al.(2008)
Hoxa4_3426 		0.605 0.421
Hoxb4
M00479_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Hoxb4_2627 		0.605 0.421
Hoxc4
M00530_2.00 		Mus musculus
NWAATNDNN
NNHNATTWN		 PBM
Berger et al.(2008)
Hoxc4_3491 		0.605 0.421
HOXA4
M05381_2.00 		Homo sapiens
NTAATKRY
RYMATTAN		 SELEX
Yin et al.(2017)
HOXA4_eDBD_HT-SELEX 		0.605 0.421
HOXB4
M05343_2.00 		Homo sapiens
YTAATKAY
RTMATTAR		 SELEX
Yin et al.(2017)
HOXB4_FL_HT-SELEX 		0.605 0.421
HOXC4
M05385_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXC4_FL_HT-SELEX 		0.605 0.421
HOXD4
M05273_2.00 		Homo sapiens
NTMATKRV
BYMATKAN		 SELEX
Yin et al.(2017)
HOXD4_eDBD_HT-SELEX 		0.605 0.421
HOXD4
M05276_2.00 		Homo sapiens
NTAATKRB
VYMATTAN		 SELEX
Yin et al.(2017)
HOXD4_FL_HT-SELEX 		0.605 0.421
HOXB4
M09162_2.00 		Homo sapiens
YTAATKRS
SYMATTAR		 Misc
Kulakovskiy et al.(2013)
HXB4_HUMAN.H11MO.0.B 		0.605 0.421
Hoxb4
M09204_2.00 		Mus musculus
YTAATKRS
SYMATTAR		 Misc
Kulakovskiy et al.(2013)
HXB4_MOUSE.H11MO.0.A 		0.605 0.421
Hoxb4
M09576_2.00 		Mus musculus
TGATDRATKRSN
NSYMATYHATCA		 Misc
Heinz et al.(2010)
ES-Hoxb4_GSE34014 		0.605 0.421
HOXA4
M10755_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA4_Q2 		0.605 0.421
HOXC4
M00328_2.00 		Homo sapiens
YTAATTAB
VTAATTAR		 PBM
Barrera et al.(2016)
HOXC4_N178S 		0.605 0.421
HOXC4
M00329_2.00 		Homo sapiens
NTAATKRNN
NNYMATTAN		 PBM
Barrera et al.(2016)
HOXC4_R158L 		0.605 0.421
HOXA4
M05382_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXA4_eDBD_Methyl-HT-SELEX 		0.605 0.421
HOXB4
M05344_2.00 		Homo sapiens
HTAAYGAY
RTCRTTAD		 SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_1 		0.605 0.421
HOXB4
M05345_2.00 		Homo sapiens
HTAAYKAB
VTMRTTAD		 SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_2 		0.605 0.421
HOXC4
M05386_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_1 		0.605 0.421
HOXC4
M05387_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_2 		0.605 0.421
HOXD4
M05274_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_1 		0.605 0.421
HOXD4
M05275_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_2 		0.605 0.421
HOXD4
M05277_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_1 		0.605 0.421
HOXD4
M05278_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_2 		0.605 0.421
Duxbl1
M02099_2.00 		Mus musculus
NTGATTRNN
NNYAATCAN		 PBM
Weirauch et al.(2014)
pTH6453 		0.602 0.351
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP70438 Homeodomain 2 58

Links

Other Homeodomain family TFs
Other Lottia gigantea TFs

600 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZSCAN9 Homo sapiens ENSG00000137185 D 0.000
ZSCAN9 Bos taurus ENSBTAG00000040168 I 0.000
ZSCAN9 Equus caballus ENSECAG00000015075 I 0.000
ZSCAN9 Gorilla gorilla ENSGGOG00000000688 I 0.000
ZSCAN9 Microcebus murinus ENSMICG00000010443 I 0.000
ZSCAN9 Macaca mulatta ENSMMUG00000002537 I 0.000
ENSNLEG00000004504 Nomascus leucogenys ENSNLEG00000004504 I 0.000
ENSPANG00000013432 Papio anubis ENSPANG00000013432 I 0.000
ENSPPYG00000029879 Pongo abelii ENSPPYG00000029879 I 0.000
ZSCAN9 Pan troglodytes ENSPTRG00000017870 I 0.000
ZSCAN9 Sus scrofa ENSSSCG00000001203 I 0.000
ENSTSYG00000006203 Tarsius syrichta ENSTSYG00000006203 I 0.000
ZSCAN9 Tursiops truncatus ENSTTRG00000013203 I 0.000
ENSP00000404074 Macaca fascicularis ENSP00000404074 I 0.000