LotgiG70513 (Lottia gigantea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 LotgiG70513 T220161_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.834 0.982
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.834 0.982
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.834 0.982
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.825 0.929
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.825 0.929
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.825 0.929
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.820 0.929
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.813 0.929
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.813 0.929
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.813 0.929
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.813 0.929
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.813 0.929
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.813 0.929
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.800 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP70513 Homeodomain 1 59

Links

Other Homeodomain family TFs
Other Lottia gigantea TFs

391 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA034612 Oryza indica BGIOSGA034612 I
ONIVA11G01240 Oryza nivara ONIVA11G01240 I
ONIVA11G01190 Oryza nivara ONIVA11G01190 I
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I
ORGLA11G0202100 Oryza glaberrima ORGLA11G0202100 I
OGLUM11G00880 Oryza glumaepatula OGLUM11G00880 I
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I
OBART12G00860 Oryza barthii OBART12G00860 I
OBART11G01120 Oryza barthii OBART11G01120 I
OBART11G01110 Oryza barthii OBART11G01110 I
ORGLA12G0007700 Oryza glaberrima ORGLA12G0007700 I
BGIOSGA034611 Oryza indica BGIOSGA034611 I
BGIOSGA036755 Oryza indica BGIOSGA036755 I
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N
ORUFI11G01050 Oryza rufipogon ORUFI11G01050 N
ORUFI12G01180 Oryza rufipogon ORUFI12G01180 N
OS11G0117500 Oryza sativa OS11G0117500 N
OS12G0116700 Oryza sativa OS12G0116700 N
OPUNC12G00990 Oryza punctata OPUNC12G00990 N
OPUNC11G00980 Oryza punctata OPUNC11G00980 N
OMERI11G01570 Oryza meridionalis OMERI11G01570 N
OGLUM12G01420 Oryza glumaepatula OGLUM12G01420 N
OBART12G00850 Oryza barthii OBART12G00850 N
OB12G11030 Oryza brachyantha OB12G11030 N
OB11G10760 Oryza brachyantha OB11G10760 N
LPERR12G01080 Leersia perrieri LPERR12G01080 N
LPERR11G00970 Leersia perrieri LPERR11G00970 N
BGIOSGA036756 Oryza indica BGIOSGA036756 N