MLOC_5668 (Hordeum vulgare)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MLOC_5668 T220698_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.858 0.912
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.858 0.912
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.858 0.912
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.858 0.912
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.813 0.807
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.813 0.789
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.813 0.772
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.813 0.772
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.813 0.772
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.796 0.754
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.796 0.754
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.796 0.754
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.796 0.754
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.796 0.754
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.796 0.754
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.723 0.667
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.723 0.667
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.722 0.684
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.722 0.684
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.718 0.649
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.718 0.649
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.657 0.754
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.657 0.754
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.637 0.719
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.637 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_5668.1 Homeodomain 70 126

Links

Other Homeodomain family TFs
Other Hordeum vulgare TFs

801 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
dpl-1 Caenorhabditis elegans WBGene00001061 D 0.000
Tal_R001534 Tyto alba Tal_R001534 I 0.000
Cagra.0487s0001 Capsella grandiflora Cagra.0487s0001 I 0.000
Bostr.6251s0027 Boechera stricta Bostr.6251s0027 I 0.000
Bostr.2128s0112 Boechera stricta Bostr.2128s0112 I 0.000
Aquca_030_00076 Aquilegia coerulea Aquca_030_00076 I 0.000
gw1.2.505.1 Chlorella NC64A gw1.2.505.1 I 0.000
EuGene.0000040347 Micromonas pusilla EuGene.0000040347 I 0.000
e_gw1.74.211.1 Physcomitrella patens e_gw1.74.211.1 I 0.000
e_gw1.37.234.1 Physcomitrella patens e_gw1.37.234.1 I 0.000
cassava31269.valid.m1 Manihot esculenta cassava31269.valid.m1 I 0.000
cassava23535.valid.m1 Manihot esculenta cassava23535.valid.m1 I 0.000
30078.m002288 Ricinus communis 30078.m002288 I 0.000
Cagra.4354s0002 Capsella grandiflora Cagra.4354s0002 I 0.000
Pm002727 Prunus mume Pm002727 I 0.000
Ogr00419 Ophisaurus gracilis Ogr00419 I 0.000
Afo_R001855 Aptenodytes forsteri Afo_R001855 I 0.000
Aan_R013725 Calypte anna Aan_R013725 I 0.000
TVAG_077130 Trichomonas vaginalis TVAG_077130 I 0.000
DPA Vitis vinifera VIT_08s0007g00170 I 0.000
TRIUR3_33333 Triticum urartu TRIUR3_33333 I 0.000
Traes_3DL_1E9DECCEA Triticum aestivum Traes_3DL_1E9DECCEA I 0.000
Traes_3AL_D7DE23839 Triticum aestivum Traes_3AL_D7DE23839 I 0.000
TCM_021956 Theobroma cacao TCM_021956 I 0.000
Pavir.Ib00301 Panicum virgatum Pavir.Ib00301 I 0.000
L892_g29039 Steinernema scapterisci L892_g29039 I 0.000
DME_0000497501 Dracunculus medinensis DME_0000497501 I 0.000
augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 I 0.000
augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 I 0.000
MDOA008269 Musca domestica MDOA008269 I 0.000
LjSGA_030786.1 Lotus japonicus LjSGA_030786.1 I 0.000
estExt_fgeneshCV_pg.C_10474 Chlorella vulgaris estExt_fgeneshCV_pg.C_10474 I 0.000
Thhalv10014274m.g Eutrema salsugineum Thhalv10014274m.g I 0.000
Thhalv10014118m.g Eutrema salsugineum Thhalv10014118m.g I 0.000
SapurV1A.1230s0050 Salix purpurea SapurV1A.1230s0050 I 0.000
SapurV1A.0584s0010 Salix purpurea SapurV1A.0584s0010 I 0.000
TC010400 Tribolium castaneum TC010400 I 0.000
Pavir.Ia04201 Panicum virgatum Pavir.Ia04201 I 0.000
MDP0000316055 Malus domestica MDP0000316055 I 0.000
Lus10023926.g Linum usitatissimum Lus10023926.g I 0.000
Lus10014423.g Linum usitatissimum Lus10014423.g I 0.000
Gorai.007G375800 Gossypium raimondii Gorai.007G375800 I 0.000
fgenesh2_pg.C_Chr_02000142 Micromonas sp RCC299 fgenesh2_pg.C_Chr_02000142 I 0.000
evm.TU.contig_32800 Carica papaya evm.TU.contig_32800 I 0.000
estExt_Genemark1.C_10169 Coccomyxa subellipsoidea C169 estExt_Genemark1.C_10169 I 0.000
Carubv10001623m.g Capsella rubella Carubv10001623m.g I 0.000
Carubv10001164m.g Capsella rubella Carubv10001164m.g I 0.000
CJA13523 Caenorhabditis japonica CJA13523 I 0.000
AAEL001321 Aedes aegypti AAEL001321 I 0.000
GK22007 Drosophila willistoni FBgn0223992 I 0.000
GJ20546 Drosophila virilis FBgn0207686 I 0.000
GI20813 Drosophila mojavensis FBgn0143548 I 0.000
GH20730 Drosophila grimshawi FBgn0128193 I 0.000
F775_18467 Aegilops tauschii F775_18467 I 0.000
ENSSHAG00000011293 Sarcophilus harrisii ENSSHAG00000011293 I 0.000
ENSPMAG00000000488 Petromyzon marinus ENSPMAG00000000488 I 0.000
ENSMEUG00000012534 Macropus eugenii ENSMEUG00000012534 I 0.000
ENSAPLG00000005664 Anas platyrhynchos ENSAPLG00000005664 I 0.000
CRE22580 Caenorhabditis remanei CRE22580 I 0.000
DPA Arabidopsis lyrata fgenesh2_kg.6__159__AT5G02470.2 I 0.000
CBN26337 Caenorhabditis brenneri CBN26337 I 0.000
BRADI3G27520 Brachypodium distachyon BRADI3G27520 I 0.000
Bra009586 Brassica rapa Bra009586 I 0.000
Bra005763 Brassica rapa Bra005763 I 0.000
Bo9g183580 Brassica oleracea Bo9g183580 I 0.000
Bo3g002330 Brassica oleracea Bo3g002330 I 0.000
Bo3g001900 Brassica oleracea Bo3g001900 I 0.000
Bo2g004050 Brassica oleracea Bo2g004050 I 0.000
BGIOSGA031841 Oryza indica BGIOSGA031841 I 0.000
DPA Arabidopsis thaliana AT5G02470 I 0.000
OPUNC10G09700 Oryza punctata OPUNC10G09700 I 0.000
Solyc10g078430.1 Solanum lycopersicum Solyc10g078430.1 I 0.000
Si036124m.g Setaria italica Si036124m.g I 0.000
Sb01g046810 Sorghum bicolor Sb01g046810 I 0.000
PRUPE_ppa021369mg Prunus persica PRUPE_ppa021369mg I 0.000
POPTR_0016s09640 Populus trichocarpa POPTR_0016s09640 I 0.000
POPTR_0006s12620 Populus trichocarpa POPTR_0006s12620 I 0.000
PGSC0003DMG400008373 Solanum tuberosum PGSC0003DMG400008373 I 0.000
OS10G0440100 Oryza sativa OS10G0440100 I 0.000
ORUFI10G11860 Oryza rufipogon ORUFI10G11860 I 0.000
ORGLA10G0100200 Oryza glaberrima ORGLA10G0100200 I 0.000
DPB Arabidopsis lyrata fgenesh2_kg.6__250__AT5G03415.1 I 0.000
ONIVA10G10530 Oryza nivara ONIVA10G10530 I 0.000
OMERI10G08380 Oryza meridionalis OMERI10G08380 I 0.000
OLONG_008291 Oryza longistaminata OLONG_008291 I 0.000
OGLUM10G11120 Oryza glumaepatula OGLUM10G11120 I 0.000
OBART10G11350 Oryza barthii OBART10G11350 I 0.000
OB10G18700 Oryza brachyantha OB10G18700 I 0.000
GUITHDRAFT_133922 Guillardia theta GUITHDRAFT_133922 I 0.000
GSMUA_Achr5G12510_001 Musa acuminata GSMUA_Achr5G12510_001 I 0.000
GRMZM2G086072 Zea mays GRMZM2G086072 I 0.000
GRMZM2G063387 Zea mays GRMZM2G063387 I 0.000
aug1.119_g21398 Bigelowiella natans aug1.119_g21398 N 0.000
fgenesh1_pg.22__26 Bigelowiella natans fgenesh1_pg.22__26 N 0.000