ONIVA01G07970 (Oryza nivara)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ONIVA01G07970 T221617_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.780 0.860
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.780 0.860
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.780 0.860
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.775 0.860
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.775 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA01G07970.1 Homeodomain 10 70
ONIVA01G07970.2 Homeodomain 10 70
ONIVA01G07970.3 Homeodomain 10 70
ONIVA01G07970.4 Homeodomain 10 70
ONIVA01G07970.5 Homeodomain 10 70
ONIVA01G07970.6 Homeodomain 10 70

Links

Other Homeodomain family TFs
Other Oryza nivara TFs

331 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_113.2 Carica papaya evm.TU.supercontig_113.2 N 0.000
29685.m000503 Ricinus communis 29685.m000503 N 0.000
cassava25471.m1 Manihot esculenta cassava25471.m1 N 0.000
Cucsa.019230 Cucumis sativus Cucsa.019230 N 0.000
Aquca_008_00101 Aquilegia coerulea Aquca_008_00101 N 0.000
Bostr.13671s0465 Boechera stricta Bostr.13671s0465 N 0.000
Cagra.4395s0212 Capsella grandiflora Cagra.4395s0212 N 0.000
Carubv10012599m.g Capsella rubella Carubv10012599m.g N 0.000
Ciclev10000456m.g Citrus clementina Ciclev10000456m.g N 0.000
Eucgr.G00085 Eucalyptus grandis Eucgr.G00085 N 0.000
Pm003854 Prunus mume Pm003854 N 0.000
gene29088-v1.0-hybrid Fragaria vesca gene29088-v1.0-hybrid N 0.000
Gorai.006G118900 Gossypium raimondii Gorai.006G118900 N 0.000
MDP0000234814 Malus domestica MDP0000234814 N 0.000
orange1.1g047253m.g Citrus sinensis orange1.1g047253m.g N 0.000
SapurV1A.0225s0240 Salix purpurea SapurV1A.0225s0240 N 0.000
Thhalv10006984m.g Eutrema salsugineum Thhalv10006984m.g N 0.000
PK06148.1 Cannabis sativa PK06148.1 N 0.000
PDK_20s1756181g001 Phoenix dactylifera PDK_20s1756181g001 N 0.000
PRUPE_ppa002379mg Prunus persica PRUPE_ppa002379mg N 0.000
BGIOSGA012540 Oryza indica BGIOSGA012540 N 0.000
Bo5g010680 Brassica oleracea Bo5g010680 N 0.000
BRADI5G11330 Brachypodium distachyon BRADI5G11330 N 0.000
GLYMA10G00380 Glycine max GLYMA10G00380 N 0.000
MLOC_15705 Hordeum vulgare MLOC_15705 N 0.000
OB04G20960 Oryza brachyantha OB04G20960 N 0.000
ORGLA04G0107700 Oryza glaberrima ORGLA04G0107700 N 0.000
OS04G0443000 Oryza sativa OS04G0443000 N 0.000
POPTR_0004s23620 Populus trichocarpa POPTR_0004s23620 N 0.000
FRS11 Arabidopsis thaliana AT1G10240 N 0.000
Sb06g017580 Sorghum bicolor Sb06g017580 N 0.000
Si012297m.g Setaria italica Si012297m.g N 0.000
Solyc01g103180.2 Solanum lycopersicum Solyc01g103180.2 N 0.000
TCM_041141 Theobroma cacao TCM_041141 N 0.000
Traes_2AL_9A4A7514E Triticum aestivum Traes_2AL_9A4A7514E N 0.000
Traes_2BL_C1DE13045 Triticum aestivum Traes_2BL_C1DE13045 N 0.000
TRIUR3_11057 Triticum urartu TRIUR3_11057 N 0.000
VIT_12s0035g01360 Vitis vinifera VIT_12s0035g01360 N 0.000