POPTR_0018s05080 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0018s05080 T222583_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.855 0.900
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.604 0.520
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s05080.1 Homeodomain 487 539

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

953 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Brh_R008738 Buceros rhinoceros Brh_R008738 N
ASCL4 Pteropus vampyrus ENSPVAG00000001597 N
ASCL4 Sorex araneus ENSSARG00000004843 N
ASCL4 Sus scrofa ENSSSCG00000000159 N
ASCL4 Taeniopygia guttata ENSTGUG00000010960 N
ASCL4 Tursiops truncatus ENSTTRG00000011068 N
Aan_R008653 Calypte anna Aan_R008653 N
Afo_R011068 Aptenodytes forsteri Afo_R011068 N
Alligator_sinensis_CCG012514.1 Alligator sinensis Alligator_sinensis_CCG012514.1 N
ENSPSIG00000011827 Pelodiscus sinensis ENSPSIG00000011827 N
Cmyd_10007197 Chelonia mydas Cmyd_10007197 N
ENSP00000345420-D1 Bos grunniens ENSP00000345420-D1 N
ENSP00000345420 Macaca fascicularis ENSP00000345420 N
Gfo_R004637 Geospiza fortis Gfo_R004637 N
Ogr16121 Ophisaurus gracilis Ogr16121 N
Pvit_09755 Pogona vitticeps Pvit_09755 N
Tal_R012347 Tyto alba Tal_R012347 N
XP_002940370 Xenopus tropicalis XP_002940370 N
ASCL4 Homo sapiens ENSG00000187855 N
ASCL4 Anolis carolinensis ENSACAG00000014904 N
ENSAMXG00000025834 Astyanax mexicanus ENSAMXG00000025834 N
ENSAPLG00000010091 Anas platyrhynchos ENSAPLG00000010091 N
ASCL4 Bos taurus ENSBTAG00000046402 N
ENSCSAG00000018942 Chlorocebus sabaeus ENSCSAG00000018942 N
ASCL4 Dasypus novemcinctus ENSDNOG00000012573 N
ASCL4 Erinaceus europaeus ENSEEUG00000010344 N
ENSFALG00000013339 Ficedula albicollis ENSFALG00000013339 N
CapteG80670 Capitella teleta CapteG80670 N
ASCL4 Gallus gallus ENSGALG00000019304 N
ASCL4 Gorilla gorilla ENSGGOG00000025905 N
ASCL4 Loxodonta africana ENSLAFG00000004655 N
ASCL4 Meleagris gallopavo ENSMGAG00000012814 N
ASCL4 Myotis lucifugus ENSMLUG00000023526 N
ENSMMUG00000015552 Macaca mulatta ENSMMUG00000015552 N
ASCL4 Otolemur garnettii ENSOGAG00000024863 N