CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Sb04g033380 *(Sorghum bicolor)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	Sb04g033380	T222985_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.799	0.625
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.799	0.625
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.794	0.661
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.779	0.643
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.779	0.643
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.779	0.643
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.779	0.643
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.761	0.607
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.761	0.607
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.761	0.607
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.761	0.607
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.749	0.625
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.749	0.625
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.749	0.625
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.749	0.625
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.747	0.589
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.747	0.589
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.746	0.589
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.746	0.589
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.741	0.571
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.741	0.571
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.660	0.607
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.660	0.607
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.643	0.679
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.643	0.679
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.640	0.571
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.640	0.571
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Sb04g033380.1	Homeodomain	51	107	ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRS

Links
Other Homeodomain family TFs
Other *Sorghum bicolor* TFs

821 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
1703276D	Xenopus laevis	1703276D	I	0.000
BGIBMGA008456	Bombyx mori	BGIBMGA008456	I	0.000
Brh_R008378	Buceros rhinoceros	Brh_R008378	I	0.000
CAA41846	Xenopus laevis	CAA41846	I	0.000
GBX2	Oryzias latipes	ENSORLG00000001376	I	0.000
RPRC010976	Rhodnius prolixus	RPRC010976	I	0.000
GM17434	Drosophila sechellia	FBgn0172344	I	0.000
ANCDUO_04800	Ancylostoma duodenale	ANCDUO_04800	N	0.000
NECAME_11765	Necator americanus	NECAME_11765	N	0.000
NBR_0000086301	Nippostrongylus brasiliensis	NBR_0000086301	N	0.000
HPBE_0002651601	Heligmosomoides bakeri	HPBE_0002651601	N	0.000
AMIN006246	Anopheles minimus	AMIN006246	N	0.000
ANCDUO_02794	Ancylostoma duodenale	ANCDUO_02794	N	0.000
ANCCEY_10591	Ancylostoma ceylanicum	ANCCEY_10591	N	0.000
ANCCAN_18983	Ancylostoma caninum	ANCCAN_18983	N	0.000
PPAI007203	Phlebotomus papatasi	PPAI007203	N	0.000
LLOJ004702	Lutzomyia longipalpis	LLOJ004702	N	0.000
ACHR001571	Anopheles christyi	ACHR001571	N	0.000
OFLC_0000421701	Onchocerca flexuosa	OFLC_0000421701	N	0.000
PEQ_0000993201	Parascaris equorum	PEQ_0000993201	N	0.000
SBAD_0000495201	Soboliphyme baturini	SBAD_0000495201	N	0.000
SPAL_0000530600	Strongyloides papillosus	SPAL_0000530600	N	0.000
SPER_0003632001	Spirometra erinaceieuropaei	SPER_0003632001	N	0.000
SPER_0003833401	Spirometra erinaceieuropaei	SPER_0003833401	N	0.000
SROB_0000845501	Schistosoma rodhaini	SROB_0000845501	N	0.000
SSLN_0000633001	Schistocephalus solidus	SSLN_0000633001	N	0.000
SVUK_0001081801	Strongylus vulgaris	SVUK_0001081801	N	0.000
T265_14387	Opisthorchis viverrini	T265_14387	N	0.000
TRE_0000162501	Trichobilharzia regenti	TRE_0000162501	N	0.000
TRE_0000179101	Trichobilharzia regenti	TRE_0000179101	N	0.000
TTAC_0000574501	Hydatigera taeniaeformis	TTAC_0000574501	N	0.000
Ogr19002	Ophisaurus gracilis	Ogr19002	N	0.000
ACEP24283	Atta cephalotes	ACEP24283	N	0.000
ACEP27605	Atta cephalotes	ACEP27605	N	0.000
ENSNLEG00000000365	Nomascus leucogenys	ENSNLEG00000000365	N	0.000
ENSOANG00000007774	Ornithorhynchus anatinus	ENSOANG00000007774	N	0.000
ENSPANG00000024818	Papio anubis	ENSPANG00000024818	N	0.000
ENSSHAG00000002450	Sarcophilus harrisii	ENSSHAG00000002450	N	0.000
ENSTGUG00000000339	Taeniopygia guttata	ENSTGUG00000000339	N	0.000
ENSXMAG00000013191	Xiphophorus maculatus	ENSXMAG00000013191	N	0.000
MCINX012038	Melitaea cinxia	MCINX012038	N	0.000
Smp_053520	Schistosoma mansoni	Smp_053520	N	0.000
Ogr05500	Ophisaurus gracilis	Ogr05500	N	0.000
AMIN002393	Anopheles minimus	AMIN002393	N	0.000
1703276C	Xenopus laevis	1703276C	N	0.000
CAA41845	Xenopus laevis	CAA41845	N	0.000
CLEC004114	Cimex lectularius	CLEC004114	N	0.000
HHAL004742-PA	Halyomorpha halys	HHAL004742-PA	N	0.000
LCUP011770	Lucilia cuprina	LCUP011770	N	0.000
LDEC016573	Leptinotarsa decemlineata	LDEC016573	N	0.000
AATE015217	Anopheles atroparvus	AATE015217	N	0.000
WUBG_09511	Wuchereria bancrofti	WUBG_09511	N	0.000
AEPI002459	Anopheles epiroticus	AEPI002459	N	0.000
AMAM004568	Anopheles maculatus	AMAM004568	N	0.000

Sb04g033380 (Sorghum bicolor) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

821 Related TFs

Sb04g033380 **(Sorghum bicolor)
Homeodomain**