Si019554m.g (Setaria italica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Si019554m.g T223207_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.784 0.596
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.784 0.596
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.763 0.579
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.747 0.649
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.747 0.649
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.747 0.649
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.745 0.614
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.745 0.614
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.720 0.649
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.702 0.579
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.702 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si019554m Homeodomain 109 165

Links

Other Homeodomain family TFs
Other Setaria italica TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HOXC12 Homo sapiens ENSG00000123407 D 0.000
HOXD12 Homo sapiens ENSG00000170178 D 0.000
Hoxc12 Mus musculus ENSMUSG00000050328 D 0.000
Abd-B Drosophila melanogaster FBgn0000015 D 0.000
Hoxd12_CONSTRUCT PBM CONSTRUCTS Hoxd12_CONSTRUCT D 0.000
HXD12_HETFR Heterodontus francisci HXD12_HETFR D 0.000
CpipJ_CPIJ001021 Culex pipiens CpipJ_CPIJ001021 I 0.000
WUBG_14236 Wuchereria bancrofti WUBG_14236 I 0.000
AAEL009743 Aedes aegypti AAEL009743 I 0.000
AAEL009933 Aedes aegypti AAEL009933 I 0.000
ACEP10423 Atta cephalotes ACEP10423 I 0.000
ACYPI003711 Acyrthosiphon pisum ACYPI003711 I 0.000
ADAC008864 Anopheles darlingi ADAC008864 I 0.000
AGAP004664 Anopheles gambiae AGAP004664 I 0.000
BGIBMGA006385 Bombyx mori BGIBMGA006385 I 0.000
Bm7133 Brugia malayi Bm7133 I 0.000
CapteG126009 Capitella teleta CapteG126009 I 0.000
CBG23030 Caenorhabditis briggsae CBG23030 I 0.000
CBN07280 Caenorhabditis brenneri CBN07280 I 0.000
CGI_10027388 Crassostrea gigas CGI_10027388 I 0.000
CJA05820 Caenorhabditis japonica CJA05820 I 0.000
CJA42104 Caenorhabditis japonica CJA42104 I 0.000
CPIJ001021 Culex quinquefasciatus CPIJ001021 I 0.000
CRE24470 Caenorhabditis remanei CRE24470 I 0.000
DAPPUDRAFT_347213 Daphnia pulex DAPPUDRAFT_347213 I 0.000
EFV62456 Trichinella spiralis EFV62456 I 0.000
ENSACAG00000010840 Anolis carolinensis ENSACAG00000010840 I 0.000
ENSACAG00000017914 Anolis carolinensis ENSACAG00000017914 I 0.000
ENSAMEG00000000665 Ailuropoda melanoleuca ENSAMEG00000000665 I 0.000
ENSAMEG00000001858 Ailuropoda melanoleuca ENSAMEG00000001858 I 0.000
ENSAMXG00000006895 Astyanax mexicanus ENSAMXG00000006895 I 0.000
ENSAMXG00000009358 Astyanax mexicanus ENSAMXG00000009358 I 0.000
ENSAMXG00000024684 Astyanax mexicanus ENSAMXG00000024684 I 0.000
ENSAPLG00000007306 Anas platyrhynchos ENSAPLG00000007306 I 0.000
ENSAPLG00000008820 Anas platyrhynchos ENSAPLG00000008820 I 0.000
HOXC12 Bos taurus ENSBTAG00000000924 I 0.000
HOXD12 Bos taurus ENSBTAG00000004314 I 0.000
HOXC12 Canis familiaris ENSCAFG00000006645 I 0.000
HOXD12 Canis familiaris ENSCAFG00000013429 I 0.000
HOXC12 Callithrix jacchus ENSCJAG00000018806 I 0.000
HOXD12 Cavia porcellus ENSCPOG00000005496 I 0.000
HOXC12 Cavia porcellus ENSCPOG00000026314 I 0.000
ENSCSAG00000005459 Chlorocebus sabaeus ENSCSAG00000005459 I 0.000
ENSCSAG00000014464 Chlorocebus sabaeus ENSCSAG00000014464 I 0.000
hoxd12a Danio rerio ENSDARG00000059263 I 0.000
hoxc12a Danio rerio ENSDARG00000070352 I 0.000
hoxc12b Danio rerio ENSDARG00000103133 I 0.000
HOXD12 Dasypus novemcinctus ENSDNOG00000047700 I 0.000
Hoxd12 Dipodomys ordii ENSDORG00000009434 I 0.000
HOXC12 Equus caballus ENSECAG00000024893 I 0.000
ENSFALG00000003122 Ficedula albicollis ENSFALG00000003122 I 0.000
HOXC12 Felis catus ENSFCAG00000023389 I 0.000
hoxd12a Gasterosteus aculeatus ENSGACG00000004574 I 0.000
HOXD12 Gallus gallus ENSGALG00000009274 I 0.000
ENSGALG00000026393 Gallus gallus ENSGALG00000026393 I 0.000
ENSGGOG00000001340 Gorilla gorilla ENSGGOG00000001340 I 0.000
ENSGGOG00000023318 Gorilla gorilla ENSGGOG00000023318 I 0.000
HOXC12 Gorilla gorilla ENSGGOG00000023684 I 0.000
ENSGMOG00000004313 Gadus morhua ENSGMOG00000004313 I 0.000
ENSLACG00000009639 Latimeria chalumnae ENSLACG00000009639 I 0.000
ENSLACG00000016761 Latimeria chalumnae ENSLACG00000016761 I 0.000
HOXD12 Loxodonta africana ENSLAFG00000017497 I 0.000
HOXC12 Loxodonta africana ENSLAFG00000024750 I 0.000
ENSLOCG00000006304 Lepisosteus oculatus ENSLOCG00000006304 I 0.000
ENSLOCG00000007146 Lepisosteus oculatus ENSLOCG00000007146 I 0.000
ENSMEUG00000009000 Macropus eugenii ENSMEUG00000009000 I 0.000
HOXD12 Meleagris gallopavo ENSMGAG00000009673 I 0.000
HOXD12 Microcebus murinus ENSMICG00000002172 I 0.000
HOXC12 Microcebus murinus ENSMICG00000011709 I 0.000
HOXD12 Myotis lucifugus ENSMLUG00000007009 I 0.000
HOXC12 Myotis lucifugus ENSMLUG00000026984 I 0.000
HOXC12 Macaca mulatta ENSMMUG00000004541 I 0.000
HOXD12 Macaca mulatta ENSMMUG00000023501 I 0.000
HOXD12 Monodelphis domestica ENSMODG00000009555 I 0.000
ENSMPUG00000005886 Mustela putorius furo ENSMPUG00000005886 I 0.000
ENSMPUG00000014025 Mustela putorius furo ENSMPUG00000014025 I 0.000
Hoxd12 Mus musculus ENSMUSG00000001823 I 0.000
ENSNLEG00000006006 Nomascus leucogenys ENSNLEG00000006006 I 0.000
ENSNLEG00000017683 Nomascus leucogenys ENSNLEG00000017683 I 0.000
HOXD12 Ornithorhynchus anatinus ENSOANG00000004743 I 0.000
ENSOANG00000015091 Ornithorhynchus anatinus ENSOANG00000015091 I 0.000
ENSOARG00000000088 Ovis aries ENSOARG00000000088 I 0.000
ENSOARG00000016352 Ovis aries ENSOARG00000016352 I 0.000
HOXC12 Oryctolagus cuniculus ENSOCUG00000001157 I 0.000
HOXD12 Oryctolagus cuniculus ENSOCUG00000002412 I 0.000
HOXC12 Otolemur garnettii ENSOGAG00000025383 I 0.000
ENSONIG00000008617 Oreochromis niloticus ENSONIG00000008617 I 0.000
ENSONIG00000012233 Oreochromis niloticus ENSONIG00000012233 I 0.000
HOXD12 Ochotona princeps ENSOPRG00000011418 I 0.000
hoxc12a Oryzias latipes ENSORLG00000007902 I 0.000
hoxd12a Oryzias latipes ENSORLG00000017536 I 0.000
ENSPANG00000001060 Papio anubis ENSPANG00000001060 I 0.000
ENSPANG00000010379 Papio anubis ENSPANG00000010379 I 0.000
HOXD12 Procavia capensis ENSPCAG00000015624 I 0.000
ENSPFOG00000002075 Poecilia formosa ENSPFOG00000002075 I 0.000
ENSPFOG00000013995 Poecilia formosa ENSPFOG00000013995 I 0.000
ENSPPYG00000004589 Pongo abelii ENSPPYG00000004589 I 0.000
ENSPPYG00000012957 Pongo abelii ENSPPYG00000012957 I 0.000
ENSPSIG00000003112 Pelodiscus sinensis ENSPSIG00000003112 I 0.000
ENSPSIG00000004903 Pelodiscus sinensis ENSPSIG00000004903 I 0.000
HOXC12 Pan troglodytes ENSPTRG00000005026 I 0.000
HOXD12 Pan troglodytes ENSPTRG00000012665 I 0.000
HOXC12 Pteropus vampyrus ENSPVAG00000012297 I 0.000
HOXD12 Pteropus vampyrus ENSPVAG00000017416 I 0.000
Hoxd12 Rattus norvegicus ENSRNOG00000001587 I 0.000
Hoxc12 Rattus norvegicus ENSRNOG00000016116 I 0.000
ENSSHAG00000015948 Sarcophilus harrisii ENSSHAG00000015948 I 0.000
HOXC12 Sus scrofa ENSSSCG00000000281 I 0.000
HOXD12 Sus scrofa ENSSSCG00000015980 I 0.000
ENSSTOG00000004918 Ictidomys tridecemlineatus ENSSTOG00000004918 I 0.000
ENSSTOG00000019478 Ictidomys tridecemlineatus ENSSTOG00000019478 I 0.000
ENSTBEG00000010799 Tupaia belangeri ENSTBEG00000010799 I 0.000
ENSTGUG00000008938 Taeniopygia guttata ENSTGUG00000008938 I 0.000
hoxc12a Tetraodon nigroviridis ENSTNIG00000001773 I 0.000
hoxd12a Tetraodon nigroviridis ENSTNIG00000001777 I 0.000
hoxc12a Takifugu rubripes ENSTRUG00000004280 I 0.000
hoxd12a Takifugu rubripes ENSTRUG00000017534 I 0.000
ENSTSYG00000003740 Tarsius syrichta ENSTSYG00000003740 I 0.000
HOXC12 Tursiops truncatus ENSTTRG00000004543 I 0.000
HOXD12 Tursiops truncatus ENSTTRG00000013772 I 0.000
HOXD12 Vicugna pacos ENSVPAG00000010196 I 0.000
ENSXMAG00000000425 Xiphophorus maculatus ENSXMAG00000000425 I 0.000
Abd-B Drosophila simulans FBgn0025043 I 0.000
Abd-B Drosophila sechellia FBgn0025061 I 0.000
GA11117 Drosophila pseudoobscura FBgn0071172 I 0.000
GF17921 Drosophila ananassae FBgn0094939 I 0.000
GG16806 Drosophila erecta FBgn0109036 I 0.000
GH18073 Drosophila grimshawi FBgn0125541 I 0.000
GI23752 Drosophila mojavensis FBgn0146477 I 0.000
GL23001 Drosophila persimilis FBgn0160591 I 0.000
GJ10598 Drosophila virilis FBgn0197878 I 0.000
GK13851 Drosophila willistoni FBgn0215859 I 0.000
GE26123 Drosophila yakuba FBgn0243162 I 0.000
GB51284 Apis mellifera GB51284 I 0.000
HelroG110662 Helobdella robusta HelroG110662 I 0.000
HMEL025035 Heliconius melpomene HMEL025035 I 0.000
ISCW021042 Ixodes scapularis ISCW021042 I 0.000
KGM_01497 Danaus plexippus KGM_01497 I 0.000
L798_07386 Zootermopsis nevadensis L798_07386 I 0.000
LOAG_12837 Loa loa LOAG_12837 I 0.000
LotgiG89720 Lottia gigantea LotgiG89720 I 0.000
MCINX017034 Melitaea cinxia MCINX017034 I 0.000
NV15142 Nasonia vitripennis NV15142 I 0.000
PHUM219670 Pediculus humanus PHUM219670 I 0.000
SINV20763 Solenopsis invicta SINV20763 I 0.000
SMAR004172 Strigamia maritima SMAR004172 I 0.000
Smp_202120 Schistosoma mansoni Smp_202120 I 0.000
SPU_002632 Strongylocentrotus purpuratus SPU_002632 I 0.000
SPU_011798 Strongylocentrotus purpuratus SPU_011798 I 0.000
TC000889 Tribolium castaneum TC000889 I 0.000
tetur20g02350 Tetranychus urticae tetur20g02350 I 0.000
php-3 Caenorhabditis elegans WBGene00004024 I 0.000
WBGene00245000 Onchocerca volvulus WBGene00245000 I 0.000
YQE_04570 Dendroctonus ponderosae YQE_04570 I 0.000
Aan_R004562 Calypte anna Aan_R004562 I 0.000
Aan_R014659 Calypte anna Aan_R014659 I 0.000
Afo_R003393 Aptenodytes forsteri Afo_R003393 I 0.000
Afo_R006929 Aptenodytes forsteri Afo_R006929 I 0.000
Alligator_sinensis_CCG010656.1 Alligator sinensis Alligator_sinensis_CCG010656.1 I 0.000
Brh_R002805 Buceros rhinoceros Brh_R002805 I 0.000
Brh_R005179 Buceros rhinoceros Brh_R005179 I 0.000
Cflo_00841--XP_394119.2_APIME Camponotus floridanus Cflo_00841--XP_394119.2_APIME I 0.000
ENSBTAP00000005652-D1 Bos grunniens ENSBTAP00000005652-D1 I 0.000
ENSP00000243103-D1 Bos grunniens ENSP00000243103-D1 I 0.000
ENSP00000243103 Macaca fascicularis ENSP00000243103 I 0.000
ENSP00000385586 Macaca fascicularis ENSP00000385586 I 0.000
Gfo_R001378 Geospiza fortis Gfo_R001378 I 0.000
Hsal_01810--XP_394119.2_APIME Harpegnathos saltator Hsal_01810--XP_394119.2_APIME I 0.000
Myotis_brandtii_HOXD12_10034996 Myotis brandtii Myotis_brandtii_HOXD12_10034996 I 0.000
Ogr02756 Ophisaurus gracilis Ogr02756 I 0.000
Ogr14607 Ophisaurus gracilis Ogr14607 I 0.000
Tal_R000506 Tyto alba Tal_R000506 I 0.000
Tal_R008153 Tyto alba Tal_R008153 I 0.000
e_gw.260.40.1 Branchiostoma floridae e_gw.260.40.1 I 0.000
e_gw.260.41.1 Branchiostoma floridae e_gw.260.41.1 I 0.000
gw.260.58.1 Branchiostoma floridae gw.260.58.1 I 0.000
gw.260.71.1 Branchiostoma floridae gw.260.71.1 I 0.000
Ocbimv22031197m.g Octopus bimaculoides Ocbimv22031197m.g I 0.000
Sakowv30000863m.g Saccoglossus kowalevskii Sakowv30000863m.g I 0.000
Sakowv30000864m.g Saccoglossus kowalevskii Sakowv30000864m.g I 0.000
CLEC025235 Cimex lectularius CLEC025235 I 0.000
LCUP000270 Lucilia cuprina LCUP000270 I 0.000
LDEC005307 Leptinotarsa decemlineata LDEC005307 I 0.000
SMU15011167 Schmidtea mediterranea SMU15011167 I 0.000
SMU15024124 Schmidtea mediterranea SMU15024124 I 0.000
SMU15040585 Schmidtea mediterranea SMU15040585 I 0.000
hoxc12 Xenopus tropicalis XB-GENE-853677 I 0.000
Minc03842 Meloidogyne incognita Minc03842 I 0.000
Minc07879 Meloidogyne incognita Minc07879 I 0.000
AARA011784 Anopheles arabiensis AARA011784 I 0.000
AATE001145 Anopheles atroparvus AATE001145 I 0.000
ACHR003915 Anopheles christyi ACHR003915 I 0.000
AEPI004973 Anopheles epiroticus AEPI004973 I 0.000
AFAF011271 Anopheles farauti AFAF011271 I 0.000
AFUN006867 Anopheles funestus AFUN006867 I 0.000
AMAM010796 Anopheles maculatus AMAM010796 I 0.000
AMEC007997 Anopheles melas AMEC007997 I 0.000
AMIN000119 Anopheles minimus AMIN000119 I 0.000
AQUA010393 Anopheles quadriannulatus AQUA010393 I 0.000
ASIS020073 Anopheles sinensis ASIS020073 I 0.000
LLOJ006217 Lutzomyia longipalpis LLOJ006217 I 0.000
MDOA007321 Musca domestica MDOA007321 I 0.000
PPAI009128 Phlebotomus papatasi PPAI009128 I 0.000
ACOC_0000951901 Angiostrongylus costaricensis ACOC_0000951901 I 0.000
ANCCAN_16140 Ancylostoma caninum ANCCAN_16140 I 0.000
ANCCEY_08302 Ancylostoma ceylanicum ANCCEY_08302 I 0.000
ASU_13748 Ascaris suum ASU_13748 I 0.000
BXY_1644900 Bursaphelenchus xylophilus BXY_1644900 I 0.000
D918_00513 Trichuris suis D918_00513 I 0.000
DICVIV_08822 Dictyocaulus viviparus DICVIV_08822 I 0.000
DME_0000789801 Dracunculus medinensis DME_0000789801 I 0.000
ECANG7_01860 Echinococcus canadensis ECANG7_01860 I 0.000
EmuJ_000824600 Echinococcus multilocularis EmuJ_000824600 I 0.000
EmuJ_000959700 Echinococcus multilocularis EmuJ_000959700 I 0.000
GPLIN_000726000 Globodera pallida GPLIN_000726000 I 0.000
HCOI00497700 Haemonchus contortus HCOI00497700 I 0.000
HCOI00497900 Haemonchus contortus HCOI00497900 I 0.000
HCOI01784000 Haemonchus contortus HCOI01784000 I 0.000
HDID_0000820601 Hymenolepis diminuta HDID_0000820601 I 0.000
HmN_000187500 Hymenolepis microstoma HmN_000187500 I 0.000
HNAJ_0000530301 Hymenolepis nana HNAJ_0000530301 I 0.000
HNAJ_0001071201 Hymenolepis nana HNAJ_0001071201 I 0.000
HPBE_0002125801 Heligmosomoides bakeri HPBE_0002125801 I 0.000
L889_g9230 Steinernema feltiae L889_g9230 I 0.000
L892_g9141 Steinernema scapterisci L892_g9141 I 0.000
L893_g25351 Steinernema glaseri L893_g25351 I 0.000
L898_g12854 Steinernema monticolum L898_g12854 I 0.000
MCOS_0000513701 Mesocestoides corti MCOS_0000513701 I 0.000
MhA1_Contig468.frz3.gene38 Meloidogyne hapla MhA1_Contig468.frz3.gene38 I 0.000
NBR_0002007501 Nippostrongylus brasiliensis NBR_0002007501 I 0.000
nDi.2.2.2.g00407 Dirofilaria immitis nDi.2.2.2.g00407 I 0.000
nOo.2.0.1.g03745 Onchocerca ochengi nOo.2.0.1.g03745 I 0.000
OFLC_0000337501 Onchocerca flexuosa OFLC_0000337501 I 0.000
PTRK_0000303300 Parastrongyloides trichosuri PTRK_0000303300 I 0.000
RSKR_0000904600 Rhabditophanes kr3021 RSKR_0000904600 I 0.000
SBAD_0000080701 Soboliphyme baturini SBAD_0000080701 I 0.000
scaffold1873-EXSNAP2012.2 Pristionchus exspectatus scaffold1873-EXSNAP2012.2 I 0.000
scaffold527-EXSNAP2012.16 Pristionchus exspectatus scaffold527-EXSNAP2012.16 I 0.000
SCUD_0001296601 Schistosoma curassoni SCUD_0001296601 I 0.000
SMRZ_0000248701 Schistosoma margrebowiei SMRZ_0000248701 I 0.000
SMUV_0000036501 Syphacia muris SMUV_0000036501 I 0.000
SMUV_0000627601 Syphacia muris SMUV_0000627601 I 0.000
SPAL_0000659000 Strongyloides papillosus SPAL_0000659000 I 0.000
SROB_0000632901 Schistosoma rodhaini SROB_0000632901 I 0.000
SSTP_0000071500 Strongyloides stercoralis SSTP_0000071500 I 0.000
SVE_1848200 Strongyloides venezuelensis SVE_1848200 I 0.000
TASK_0000423701 Taenia asiatica TASK_0000423701 I 0.000
TMUE_s0047001500 Trichuris muris TMUE_s0047001500 I 0.000
TRE_0000208301 Trichobilharzia regenti TRE_0000208301 I 0.000
TsM_000407000 Taenia solium TsM_000407000 I 0.000
TsM_001152100 Taenia solium TsM_001152100 I 0.000
TTAC_0000197601 Hydatigera taeniaeformis TTAC_0000197601 I 0.000
TTRE_0000023201 Trichuris trichiura TTRE_0000023201 I 0.000