SPU_018908 (Strongylocentrotus purpuratus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 SPU_018908 T223735_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.982
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.965
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.965
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.965
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.965
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.965
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.965
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.965
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.965
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.965
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.965
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.965
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPU_018908-tr Homeodomain 179 235

Links

Other Homeodomain family TFs
Other Strongylocentrotus purpuratus TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
KLF6 Homo sapiens ENSG00000067082 D
KLF6 Callithrix jacchus ENSCJAG00000032379 I
ENSPFOG00000015451 Poecilia formosa ENSPFOG00000015451 I
SROB_0000810301 Schistosoma rodhaini SROB_0000810301 N
ACEP19659 Atta cephalotes ACEP19659 N
OESDEN_21938 Oesophagostomum dentatum OESDEN_21938 N
BGLB001603 Biomphalaria glabrata BGLB001603 N
AEPI003098 Anopheles epiroticus AEPI003098 N
Hsal_02965--XP_624772.1_APIME Harpegnathos saltator Hsal_02965--XP_624772.1_APIME N
Cflo_16445--XP_624772.1_APIME Camponotus floridanus Cflo_16445--XP_624772.1_APIME N
Cflo_01443--XP_624772.1_APIME Camponotus floridanus Cflo_01443--XP_624772.1_APIME N
Brh_R001625 Buceros rhinoceros Brh_R001625 N
SINV23345 Solenopsis invicta SINV23345 N
PHUM399820 Pediculus humanus PHUM399820 N
KLF3 Tupaia belangeri ENSTBEG00000015639 N
ENSSHAG00000001834 Sarcophilus harrisii ENSSHAG00000001834 N
ENSSARG00000006987 Sorex araneus ENSSARG00000006987 N
Klf7 Rattus norvegicus ENSRNOG00000012961 N
KLF3 Procavia capensis ENSPCAG00000015573 N
KLF12 Oryctolagus cuniculus ENSOCUG00000004244 N
ENSOARG00000018838 Ovis aries ENSOARG00000018838 N
ENSOARG00000006771 Ovis aries ENSOARG00000006771 N
ENSGALG00000028383 Gallus gallus ENSGALG00000028383 N
KLF9 Canis familiaris ENSCAFG00000001867 N
ENSBTAG00000048085 Bos taurus ENSBTAG00000048085 N
KLF6 Bos taurus ENSBTAG00000015188 N
CJA02603 Caenorhabditis japonica CJA02603 N
Bm12319 Brugia malayi Bm12319 N
Bm11731 Brugia malayi Bm11731 N