cog-1 (Caenorhabditis elegans)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 WBGene00000584 T224625_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG20882
M01244_2.00 		Caenorhabditis briggsae
NDHDATDRN
NYHATHDHN		 PBM
Lambert et al.(2019)
pTH11477 		0.867 1.000
NKX6-2
M05184_2.00 		Homo sapiens
DTAATTRN
NYAATTAH		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_HT-SELEX 		0.819 0.754
NKX6-2
M05186_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_HT-SELEX 		0.819 0.754
NKX6-2
M10711_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX62_Q2 		0.819 0.754
NKX6-2
M05185_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_Methyl-HT-SELEX 		0.819 0.754
NKX6-2
M05187_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_Methyl-HT-SELEX 		0.819 0.754
Nkx6-3
M00522_2.00 		Mus musculus
NDYDATNRN
NYNATHRHN		 PBM
Berger et al.(2008)
Nkx6-3_3446 		0.811 0.772
NKX6-3
M05242_2.00 		Homo sapiens
NWTAATGRB
VYCATTAWN		 SELEX
Yin et al.(2017)
NKX6-3_eDBD_HT-SELEX 		0.811 0.772
NKX6-3
M05243_2.00 		Homo sapiens
DWTAATGRB
VYCATTAWH		 SELEX
Yin et al.(2017)
NKX6-3_eDBD_Methyl-HT-SELEX 		0.811 0.772
HGTX
M03869_2.00 		Drosophila melanogaster
DTAATKRN
NYMATTAH		 SELEX
Nitta et al.(2015)
HGTX_1 		0.811 0.754
HGTX
M03870_2.00 		Drosophila melanogaster
DTAATKRN
NYMATTAH		 SELEX
Nitta et al.(2015)
HGTX_2 		0.811 0.754
HGTX
M06542_2.00 		Drosophila melanogaster
DTAATKA
TMATTAH		 B1H
Mathelier et al.(2014)
MA0191.1 		0.811 0.754
HGTX
M06360_2.00 		Drosophila melanogaster
DDTAATKA
TMATTAHH		 B1H
Zhu et al.(2011)
Hgtx_Cell_FBgn0040318 		0.811 0.754
HGTX
M06361_2.00 		Drosophila melanogaster
NWTAATKA
TMATTAWN		 B1H
Zhu et al.(2011)
Hgtx_SOLEXA_FBgn0040318 		0.811 0.754
Nkx6-1
M00466_2.00 		Mus musculus
NDTDATNRN
NYNATHAHN		 PBM
Berger et al.(2008)
Nkx6-1_2825 		0.811 0.737
NKX6-1
M09151_2.00 		Homo sapiens
RAHWRATKDSNWWWTRATD
HATYAWWWNSHMATYWDTY		 Misc
Kulakovskiy et al.(2013)
NKX61_HUMAN.H11MO.0.B 		0.811 0.737
Nkx6-1
M09200_2.00 		Mus musculus
HNWRATKDNHWWWTRATDR
YHATYAWWWDNHMATYWND		 Misc
Kulakovskiy et al.(2013)
NKX61_MOUSE.H11MO.0.A 		0.811 0.737
Nkx6-1
M09573_2.00 		Mus musculus
NDTAATKR
YMATTAHN		 Misc
Heinz et al.(2010)
Islet-Nkx6.1_GSE40975 		0.811 0.737
NKX6-1
M10718_2.00 		Homo sapiens
HWTTTAATKGRWT
AWYCMATTAAAWD		 Transfac
Matys et al.(2006)
V$NKX61_01 		0.811 0.737
NKX6-1
M10719_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX61_08 		0.811 0.737
Q0N4H9_NEMVE
M02165_2.00 		Nematostella vectensis
NNYRWWNNN
NNNWWYRNN		 PBM
Weirauch et al.(2014)
pTH6101 		0.683 0.526
NEMVEDRAFT_v1g129868
M02146_2.00 		Nematostella vectensis
NYRAWNDNN
NNHNWTYRN		 PBM
Weirauch et al.(2014)
pTH5749 		0.679 0.526
NK7.1
M03847_2.00 		Drosophila melanogaster
VTTAAAYGDTD
HAHCRTTTAAB		 SELEX
Nitta et al.(2015)
NK7.1_1 		0.615 0.561
NK7.1
M03848_2.00 		Drosophila melanogaster
NSTTAATTGVY
RBCAATTAASN		 SELEX
Nitta et al.(2015)
NK7.1_2 		0.615 0.561
NK7.1
M06524_2.00 		Drosophila melanogaster
TTAATDR
YHATTAA		 B1H
Mathelier et al.(2014)
MA0196.1 		0.615 0.561
NK7.1
M06323_2.00 		Drosophila melanogaster
NTTAATDR
YHATTAAN		 B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321 		0.615 0.561
NK7.1
M06324_2.00 		Drosophila melanogaster
YTAATDR
YHATTAR		 B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321 		0.615 0.561
NEMVEDRAFT_v1g101664
M02142_2.00 		Nematostella vectensis
WATCRATC
GATYGATW		 PBM
Weirauch et al.(2014)
pTH5552 		0.604 0.456
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
R03C1.3a Homeodomain 170 226
R03C1.3b Homeodomain 20 76

Links

Other Homeodomain family TFs
Other Caenorhabditis elegans TFs

310 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Maff Mus musculus ENSMUSG00000042622 D 0.000
MAFF Homo sapiens ENSG00000185022 D 0.000
maff Tetraodon nigroviridis ENSTNIG00000001100 I 0.000
MAFG Oryzias latipes ENSORLG00000012170 I 0.000
ENSPANG00000020550 Papio anubis ENSPANG00000020550 I 0.000
MAFF Procavia capensis ENSPCAG00000013370 I 0.000
ENSPFOG00000002983 Poecilia formosa ENSPFOG00000002983 I 0.000
ENSPFOG00000005759 Poecilia formosa ENSPFOG00000005759 I 0.000
ENSPPYG00000011816 Pongo abelii ENSPPYG00000011816 I 0.000
MAFF Pan troglodytes ENSPTRG00000029431 I 0.000
MAFK Pteropus vampyrus ENSPVAG00000013872 I 0.000
Maff Rattus norvegicus ENSRNOG00000012886 I 0.000
MAFF Sus scrofa ENSSSCG00000030165 I 0.000
ENSSTOG00000025460 Ictidomys tridecemlineatus ENSSTOG00000025460 I 0.000
MAFF Taeniopygia guttata ENSTGUG00000010431 I 0.000
MAFF Otolemur garnettii ENSOGAG00000027848 I 0.000
MAFF Tursiops truncatus ENSTTRG00000005618 I 0.000
ENSXMAG00000012964 Xiphophorus maculatus ENSXMAG00000012964 I 0.000
Aan_R011585 Calypte anna Aan_R011585 I 0.000
Afo_R007908 Aptenodytes forsteri Afo_R007908 I 0.000
Alligator_sinensis_CCG008027.1 Alligator sinensis Alligator_sinensis_CCG008027.1 I 0.000
Brh_R009272 Buceros rhinoceros Brh_R009272 I 0.000
Cmyd_10007723 Chelonia mydas Cmyd_10007723 I 0.000
ENSBTAP00000028574-D1 Bos grunniens ENSBTAP00000028574-D1 I 0.000
ENSMMUP00000018288 Macaca fascicularis ENSMMUP00000018288 I 0.000
Gfo_R004700 Geospiza fortis Gfo_R004700 I 0.000
Ogr11652 Ophisaurus gracilis Ogr11652 I 0.000
Pvit_08359 Pogona vitticeps Pvit_08359 I 0.000
MAFF Loxodonta africana ENSLAFG00000022547 I 0.000
ENSAMEG00000010499 Ailuropoda melanoleuca ENSAMEG00000010499 I 0.000
ENSAMXG00000008651 Astyanax mexicanus ENSAMXG00000008651 I 0.000
MAFF Bos taurus ENSBTAG00000021435 I 0.000
MAFF Canis familiaris ENSCAFG00000029842 I 0.000
MAFF Callithrix jacchus ENSCJAG00000011992 I 0.000
ENSCSAG00000006757 Chlorocebus sabaeus ENSCSAG00000006757 I 0.000
maff Danio rerio ENSDARG00000028957 I 0.000
Maff Dipodomys ordii ENSDORG00000013449 I 0.000
MAFF Echinops telfairi ENSETEG00000012984 I 0.000
ENSFALG00000012611 Ficedula albicollis ENSFALG00000012611 I 0.000
ENSGALG00000012277 Gallus gallus ENSGALG00000012277 I 0.000
MAFF Gorilla gorilla ENSGGOG00000021932 I 0.000
ENSONIG00000019674 Oreochromis niloticus ENSONIG00000019674 I 0.000
ENSMEUG00000002984 Macropus eugenii ENSMEUG00000002984 I 0.000
MAFF Meleagris gallopavo ENSMGAG00000015937 I 0.000
ENSMICG00000011572 Microcebus murinus ENSMICG00000011572 I 0.000
MAFF Myotis lucifugus ENSMLUG00000011358 I 0.000
ENSMMUG00000013915 Macaca mulatta ENSMMUG00000013915 I 0.000
MAFF Monodelphis domestica ENSMODG00000018732 I 0.000
ENSMPUG00000013085 Mustela putorius furo ENSMPUG00000013085 I 0.000
ENSNLEG00000015068 Nomascus leucogenys ENSNLEG00000015068 I 0.000
ENSOARG00000015236 Ovis aries ENSOARG00000015236 I 0.000
MAFF Oryctolagus cuniculus ENSOCUG00000006266 I 0.000
MAFF Anolis carolinensis ENSACAG00000008424 I 0.000