Aan_R011436 (Calypte anna)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Aan_R011436 T224992_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.867 1.000
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.867 1.000
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.867 1.000
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.867 1.000
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.867 1.000
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.867 1.000
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.867 1.000
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.867 1.000
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.866 0.945
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.866 0.945
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.866 0.945
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.866 0.945
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.866 0.945
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.866 0.945
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.866 0.945
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.866 0.945
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.865 0.982
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.865 0.982
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.865 0.982
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.865 0.982
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.865 0.982
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.865 0.982
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.865 0.982
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.865 0.982
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.865 0.982
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.865 0.982
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.708 0.709
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.708 0.709
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.708 0.709
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.708 0.709
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.708 0.709
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.708 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.708 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.708 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.708 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.708 0.673
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.664 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aan_R011436 Homeodomain 67 121

Links

Other Homeodomain family TFs
Other Calypte anna TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF281 Homo sapiens ENSG00000162702 D
ZNF148 Homo sapiens ENSG00000163848 D
Zfp281 Mus musculus ENSMUSG00000041483 D
ENSAMEG00000004258 Ailuropoda melanoleuca ENSAMEG00000004258 I
ENSAMXG00000006245 Astyanax mexicanus ENSAMXG00000006245 I
ENSAMXG00000015147 Astyanax mexicanus ENSAMXG00000015147 I
ENSAPLG00000008859 Anas platyrhynchos ENSAPLG00000008859 I
ZNF148 Bos taurus ENSBTAG00000040031 I
ZNF148 Canis familiaris ENSCAFG00000012574 I
ZNF281 Choloepus hoffmanni ENSCHOG00000004074 I
ZNF281 Callithrix jacchus ENSCJAG00000005104 I
ZNF148 Callithrix jacchus ENSCJAG00000006741 I
ENSCSAG00000000250 Chlorocebus sabaeus ENSCSAG00000000250 I
znf281a Danio rerio ENSDARG00000000567 I
znf281b Danio rerio ENSDARG00000035910 I
ZNF148 Dasypus novemcinctus ENSDNOG00000000280 I
ZNF281 Dasypus novemcinctus ENSDNOG00000016981 I
Zfp281 Dipodomys ordii ENSDORG00000002833 I
ENSDORG00000003955 Dipodomys ordii ENSDORG00000003955 I
ZNF148 Equus caballus ENSECAG00000013557 I
ZNF281 Equus caballus ENSECAG00000024354 I
ZNF281 Erinaceus europaeus ENSEEUG00000011443 I
ZNF148 Echinops telfairi ENSETEG00000002856 I
ENSFALG00000013520 Ficedula albicollis ENSFALG00000013520 I
ENSFALG00000014467 Ficedula albicollis ENSFALG00000014467 I
ZNF148 Felis catus ENSFCAG00000026852 I
ZNF281 Felis catus ENSFCAG00000028447 I
znf281b Gasterosteus aculeatus ENSGACG00000006858 I
znf281a Gasterosteus aculeatus ENSGACG00000009536 I
ZNF148 Gallus gallus ENSGALG00000012049 I
ZNF281 Gorilla gorilla ENSGGOG00000010349 I
ENSGMOG00000001704 Gadus morhua ENSGMOG00000001704 I
ENSGMOG00000008854 Gadus morhua ENSGMOG00000008854 I
ENSLACG00000014572 Latimeria chalumnae ENSLACG00000014572 I
ZNF148 Loxodonta africana ENSLAFG00000016025 I
ENSLOCG00000002769 Lepisosteus oculatus ENSLOCG00000002769 I
ENSLOCG00000011584 Lepisosteus oculatus ENSLOCG00000011584 I
ENSMEUG00000011709 Macropus eugenii ENSMEUG00000011709 I
ZNF281 Microcebus murinus ENSMICG00000001070 I
ZNF148 Macaca mulatta ENSMMUG00000001169 I
ZNF281 Macaca mulatta ENSMMUG00000007334 I
ZNF281 Monodelphis domestica ENSMODG00000012840 I
ZNF148 Monodelphis domestica ENSMODG00000018374 I
ENSMPUG00000004162 Mustela putorius furo ENSMPUG00000004162 I
ENSMPUG00000019246 Mustela putorius furo ENSMPUG00000019246 I
Zfp148 Mus musculus ENSMUSG00000022811 I
ENSNLEG00000000773 Nomascus leucogenys ENSNLEG00000000773 I
ENSNLEG00000018067 Nomascus leucogenys ENSNLEG00000018067 I
ZNF281 Ornithorhynchus anatinus ENSOANG00000004857 I
ENSOARG00000020237 Ovis aries ENSOARG00000020237 I
ZNF281 Oryctolagus cuniculus ENSOCUG00000010120 I
ZNF281 Otolemur garnettii ENSOGAG00000010366 I
ZNF148 Otolemur garnettii ENSOGAG00000013652 I
ENSONIG00000000839 Oreochromis niloticus ENSONIG00000000839 I
ENSONIG00000016453 Oreochromis niloticus ENSONIG00000016453 I
znf281a Oryzias latipes ENSORLG00000002799 I
znf281b Oryzias latipes ENSORLG00000005292 I
ENSPANG00000004284 Papio anubis ENSPANG00000004284 I
ENSPANG00000017386 Papio anubis ENSPANG00000017386 I
ENSPFOG00000000851 Poecilia formosa ENSPFOG00000000851 I
ENSPFOG00000008024 Poecilia formosa ENSPFOG00000008024 I
ENSPPYG00000013462 Pongo abelii ENSPPYG00000013462 I
ENSPSIG00000003614 Pelodiscus sinensis ENSPSIG00000003614 I
ZNF281 Pan troglodytes ENSPTRG00000015318 I
ZNF148 Pteropus vampyrus ENSPVAG00000006133 I
Zfp148 Rattus norvegicus ENSRNOG00000001789 I
Zfp281 Rattus norvegicus ENSRNOG00000058643 I
ZNF148 Sorex araneus ENSSARG00000007257 I
ENSSHAG00000013855 Sarcophilus harrisii ENSSHAG00000013855 I
ZNF281 Sus scrofa ENSSSCG00000010911 I
ZNF148 Sus scrofa ENSSSCG00000011858 I
ENSSTOG00000027082 Ictidomys tridecemlineatus ENSSTOG00000027082 I
ZNF148 Tupaia belangeri ENSTBEG00000008435 I
ZNF148 Taeniopygia guttata ENSTGUG00000004010 I
ZNF281 Taeniopygia guttata ENSTGUG00000004438 I
znf281a Tetraodon nigroviridis ENSTNIG00000016430 I
znf281b Tetraodon nigroviridis ENSTNIG00000018917 I
znf281b Takifugu rubripes ENSTRUG00000008207 I
znf281a Takifugu rubripes ENSTRUG00000016619 I
ENSTSYG00000007604 Tarsius syrichta ENSTSYG00000007604 I
ZNF281 Tursiops truncatus ENSTTRG00000004326 I
ZNF148 Tursiops truncatus ENSTTRG00000014714 I
Aan_R003668 Calypte anna Aan_R003668 I
Aan_R014758 Calypte anna Aan_R014758 I
Afo_R004007 Aptenodytes forsteri Afo_R004007 I
Afo_R008251 Aptenodytes forsteri Afo_R008251 I
Alligator_sinensis_CCG011250.1 Alligator sinensis Alligator_sinensis_CCG011250.1 I
Alligator_sinensis_CCG014066.1 Alligator sinensis Alligator_sinensis_CCG014066.1 I
Brh_R001493 Buceros rhinoceros Brh_R001493 I
Brh_R005182 Buceros rhinoceros Brh_R005182 I
Cmyd_10009615 Chelonia mydas Cmyd_10009615 I
Cmyd_10021057 Chelonia mydas Cmyd_10021057 I
ENSP00000356322-D1 Bos grunniens ENSP00000356322-D1 I
ENSP00000356322 Macaca fascicularis ENSP00000356322 I
ENSP00000420448-D1 Bos grunniens ENSP00000420448-D1 I
ENSP00000420448 Macaca fascicularis ENSP00000420448 I
Gfo_R001184 Geospiza fortis Gfo_R001184 I
Gfo_R006633 Geospiza fortis Gfo_R006633 I
Ogr00130 Ophisaurus gracilis Ogr00130 I
Pvit_14619 Pogona vitticeps Pvit_14619 I
Tal_R010113 Tyto alba Tal_R010113 I
Tal_R010256 Tyto alba Tal_R010256 I
znf281 Xenopus tropicalis XB-GENE-5933312 I
znf148 Xenopus tropicalis XB-GENE-996852 I