Cmyd_10006711 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10006711 T225686_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.789 0.609
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.789 0.609
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.789 0.609
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.789 0.609
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.789 0.609
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.789 0.609
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.789 0.609
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.789 0.609
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.789 0.609
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.370
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10006711 Homeodomain 184 229

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

1240 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL005974 Aedes aegypti AAEL005974 I 0.000
AATE018929 Anopheles atroparvus AATE018929 I 0.000
ACOM031223 Anopheles coluzzii ACOM031223 I 0.000
e_gw.5.535.1 Branchiostoma floridae e_gw.5.535.1 I 0.655
e_gw.5.534.1 Branchiostoma floridae e_gw.5.534.1 I 0.655
AMEM006151 Anopheles merus AMEM006151 I 0.000
nkx3.2 Takifugu rubripes ENSTRUG00000014438 I 0.000
MICALL2 Takifugu rubripes ENSTRUG00000013527 I 0.651
ENSTNIG00000018605 Tetraodon nigroviridis ENSTNIG00000018605 I 0.651
HLX Sorex araneus ENSSARG00000009476 I 0.000
ENSMEUG00000003167 Macropus eugenii ENSMEUG00000003167 I 0.000
HmN_000793400 Hymenolepis microstoma HmN_000793400 I 0.641
HLX Echinops telfairi ENSETEG00000003298 I 0.000
ENSDORG00000013256 Dipodomys ordii ENSDORG00000013256 I 0.000
AGAP005727 Anopheles gambiae AGAP005727 I 0.000
AQUA011153 Anopheles quadriannulatus AQUA011153 N 0.000
TTAC_0001113501 Hydatigera taeniaeformis TTAC_0001113501 N 0.000
CpipJ_CPIJ016099 Culex pipiens CpipJ_CPIJ016099 N 0.000
ACUA018681 Anopheles culicifacies ACUA018681 N 0.000
ADIR007401 Anopheles dirus ADIR007401 N 0.000
AEPI004567 Anopheles epiroticus AEPI004567 N 0.000
AFAF010529 Anopheles farauti AFAF010529 N 0.000
AFAF016470 Anopheles farauti AFAF016470 N 0.000
TRE_0001854501 Trichobilharzia regenti TRE_0001854501 N 0.000
AFUN006141 Anopheles funestus AFUN006141 N 0.000
AFUN006142 Anopheles funestus AFUN006142 N 0.000
AMEC014801 Anopheles melas AMEC014801 N 0.000
TRE_0001634301 Trichobilharzia regenti TRE_0001634301 N 0.000
SBAD_0000059701 Soboliphyme baturini SBAD_0000059701 N 0.000
ASTEI06400 Anopheles stephensi ASTEI06400 N 0.000
BGLB001079 Biomphalaria glabrata BGLB001079 N 0.000
T265_04102 Opisthorchis viverrini T265_04102 N 0.000
SSLN_0001900001 Schistocephalus solidus SSLN_0001900001 N 0.000
SPER_0000200201 Spirometra erinaceieuropaei SPER_0000200201 N 0.000
PPAI003680 Phlebotomus papatasi PPAI003680 N 0.000
csin111071 Clonorchis sinensis csin111071 N 0.000
D915_01034 Fasciola hepatica D915_01034 N 0.000
SCUD_0000356901 Schistosoma curassoni SCUD_0000356901 N 0.000
L892_g2163 Steinernema scapterisci L892_g2163 N 0.000
ENSTGUG00000002708 Taeniopygia guttata ENSTGUG00000002708 N 0.000
ACEP16435 Atta cephalotes ACEP16435 N 0.000
BGIBMGA011355 Bombyx mori BGIBMGA011355 N 0.000
CPIJ016099 Culex quinquefasciatus CPIJ016099 N 0.000
ENSACAG00000002042 Anolis carolinensis ENSACAG00000002042 N 0.000
ENSAPLG00000006374 Anas platyrhynchos ENSAPLG00000006374 N 0.000
DBX1 Canis familiaris ENSCAFG00000009813 N 0.000
ENSEEUG00000014300 Erinaceus europaeus ENSEEUG00000014300 N 0.000
ENSFALG00000012045 Ficedula albicollis ENSFALG00000012045 N 0.000
ENSGALG00000027554 Gallus gallus ENSGALG00000027554 N 0.000
ENSGMOG00000002488 Gadus morhua ENSGMOG00000002488 N 0.000
ENSOPRG00000015148 Ochotona princeps ENSOPRG00000015148 N 0.000
ENSTBEG00000005783 Tupaia belangeri ENSTBEG00000005783 N 0.000
AARA005693 Anopheles arabiensis AARA005693 N 0.000
L798_10069 Zootermopsis nevadensis L798_10069 N 0.000
LotgiG155764 Lottia gigantea LotgiG155764 N 0.000
MCINX013655 Melitaea cinxia MCINX013655 N 0.000
RPRC011993 Rhodnius prolixus RPRC011993 N 0.000
SINV13310 Solenopsis invicta SINV13310 N 0.000
Aan_R009659 Calypte anna Aan_R009659 N 0.000
Gfo_R010904 Geospiza fortis Gfo_R010904 N 0.000
Ocbimv22038272m.g Octopus bimaculoides Ocbimv22038272m.g N 0.000
CLEC012266 Cimex lectularius CLEC012266 N 0.000
LCUP015731 Lucilia cuprina LCUP015731 N 0.000
LDEC001875 Leptinotarsa decemlineata LDEC001875 N 0.000
AALB004801 Anopheles albimanus AALB004801 N 0.000