Cmyd_10014551 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10014551 T225741_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.831 0.870
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.831 0.870
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.831 0.870
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.831 0.870
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.831 0.870
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.831 0.870
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.831 0.870
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.831 0.870
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.831 0.870
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.348
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.348
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.348
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10014551 Homeodomain 74 119

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

1242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OS05G0455200 Oryza sativa OS05G0455200 I
OGLUM05G19970 Oryza glumaepatula OGLUM05G19970 I
OGLUM12G04370 Oryza glumaepatula OGLUM12G04370 I
OMERI01G34260 Oryza meridionalis OMERI01G34260 I
OMERI05G16460 Oryza meridionalis OMERI05G16460 I
OMERI12G01910 Oryza meridionalis OMERI12G01910 I
ONIVA01G42140 Oryza nivara ONIVA01G42140 I
ONIVA12G03330 Oryza nivara ONIVA12G03330 I
OPUNC01G36100 Oryza punctata OPUNC01G36100 I
OPUNC05G16530 Oryza punctata OPUNC05G16530 I
OPUNC12G03540 Oryza punctata OPUNC12G03540 I
ORGLA01G0311100 Oryza glaberrima ORGLA01G0311100 I
ORGLA05G0163600 Oryza glaberrima ORGLA05G0163600 I
ORUFI01G40590 Oryza rufipogon ORUFI01G40590 I
OGLUM01G41200 Oryza glumaepatula OGLUM01G41200 I
OS06G0108900 Oryza sativa OS06G0108900 I
PGSC0003DMG400021323 Solanum tuberosum PGSC0003DMG400021323 I
Sb03g039840 Sorghum bicolor Sb03g039840 I
Si000753m.g Setaria italica Si000753m.g I
Solyc01g007070.2 Solanum lycopersicum Solyc01g007070.2 I
Solyc06g074120.2 Solanum lycopersicum Solyc06g074120.2 I
TCM_041235 Theobroma cacao TCM_041235 I
Traes_1AL_D36224AD9 Triticum aestivum Traes_1AL_D36224AD9 I
Traes_7DS_86586E87F Triticum aestivum Traes_7DS_86586E87F I
TRIUR3_05123 Triticum urartu TRIUR3_05123 I
BLH5 Vitis vinifera VIT_06s0009g00410 I
SapurV1A.0216s0040 Salix purpurea SapurV1A.0216s0040 I
F775_11482 Aegilops tauschii F775_11482 I
BGIOSGA000492 Oryza indica BGIOSGA000492 I
BGIOSGA036589 Oryza indica BGIOSGA036589 I
Bo3g029830 Brassica oleracea Bo3g029830 I
Bo4g036190 Brassica oleracea Bo4g036190 I
Bo4g185820 Brassica oleracea Bo4g185820 I
Bra005310 Brassica rapa Bra005310 I
Bra013075 Brassica rapa Bra013075 I
Bra013076 Brassica rapa Bra013076 I
Bra017277 Brassica rapa Bra017277 I
Bra023045 Brassica rapa Bra023045 I
BRADI1G51980 Brachypodium distachyon BRADI1G51980 I
BRADI2G23530 Brachypodium distachyon BRADI2G23530 I
BRADI3G32040 Brachypodium distachyon BRADI3G32040 I
BLH1 Arabidopsis thaliana AT2G35940 I
F775_13316 Aegilops tauschii F775_13316 I
BLH1 Arabidopsis lyrata fgenesh2_kg.4__1624__AT2G35940.3 I
GLYMA18G41280 Glycine max GLYMA18G41280 I
GRMZM2G154641 Zea mays GRMZM2G154641 I
GSMUA_Achr10G06670_001 Musa acuminata GSMUA_Achr10G06670_001 I
GSMUA_Achr1G06400_001 Musa acuminata GSMUA_Achr1G06400_001 I
GSMUA_Achr7G14960_001 Musa acuminata GSMUA_Achr7G14960_001 I
LPERR01G31990 Leersia perrieri LPERR01G31990 I
LPERR06G00490 Leersia perrieri LPERR06G00490 I
MLOC_3638 Hordeum vulgare MLOC_3638 I
MTR_5g018860 Medicago truncatula MTR_5g018860 I
OB05G26540 Oryza brachyantha OB05G26540 I