Gfo_R010382 (Geospiza fortis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gfo_R010382 T226210_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.821 0.609
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.821 0.609
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.821 0.609
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.821 0.609
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.821 0.609
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.821 0.609
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.821 0.609
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.821 0.609
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.821 0.609
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.370
PHOX2B
M00282_2.00 		Homo sapiens
TAATTRRY
RYYAATTA		 PBM
Barrera et al.(2016)
PHOX2B_REF 		0.377 1.000
Phox2a
M00400_2.00 		Mus musculus
NNHAAYNN
NNRTTDNN		 PBM
Berger et al.(2008)
Phox2a_3947 		0.377 1.000
Phox2b
M00401_2.00 		Mus musculus
NNHAAYNN
NNRTTDNN		 PBM
Berger et al.(2008)
Phox2b_3948 		0.377 1.000
PHOX2A
M03194_2.00 		Homo sapiens
TAATTRVRTTA
TAAYBYAATTA		 SELEX
Jolma et al.(2013)
PHOX2A_1 		0.377 1.000
PHOX2B
M03113_2.00 		Homo sapiens
TAATTRVRTTA
TAAYBYAATTA		 SELEX
Jolma et al.(2013)
PHOX2B_1 		0.377 1.000
PHOX2B
M03114_2.00 		Homo sapiens
TAATTRVRTTA
TAAYBYAATTA		 SELEX
Jolma et al.(2013)
PHOX2B_2 		0.377 1.000
PHOX2A
M05244_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
PHOX2A_eDBD_HT-SELEX 		0.377 1.000
PHOX2B
M05008_2.00 		Homo sapiens
BTAATYRV
BYRATTAV		 SELEX
Yin et al.(2017)
PHOX2B_eDBD_HT-SELEX 		0.377 1.000
PHOX2B
M05010_2.00 		Homo sapiens
TAATTWRATTA
TAATYWAATTA		 SELEX
Yin et al.(2017)
PHOX2B_FL_HT-SELEX 		0.377 1.000
Phox2a
M09564_2.00 		Mus musculus
NTAATBNRATTA
TAATYNVATTAN		 Misc
Heinz et al.(2010)
Neuron-Phox2a_GSE31456 		0.377 1.000
PHOX2A
M05245_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
PHOX2A_eDBD_Methyl-HT-SELEX 		0.377 1.000
PHOX2B
M05009_2.00 		Homo sapiens
BTAATYRN
NYRATTAV		 SELEX
Yin et al.(2017)
PHOX2B_eDBD_Methyl-HT-SELEX 		0.377 1.000
PHOX2B
M05011_2.00 		Homo sapiens
TAATTHRATTA
TAATYDAATTA		 SELEX
Yin et al.(2017)
PHOX2B_FL_Methyl-HT-SELEX 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R010382 Homeodomain 96 141

Links

Other Homeodomain family TFs
Other Geospiza fortis TFs

1325 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU07379 Neurospora crassa NCU07379 D 0.000
PDIP_02990 Penicillium digitatum PDIP_02990 I 0.000
SMAC_00328 Sordaria macrospora SMAC_00328 I 0.000
SETTUDRAFT_169120 Setosphaeria turcica SETTUDRAFT_169120 I 0.000
SEPMUDRAFT_103885 Sphaerulina musiva SEPMUDRAFT_103885 I 0.000
SBOR_9585 Sclerotinia borealis SBOR_9585 I 0.000
S40288_06814 Stachybotrys chartarum S40288_06814 I 0.000
PV10_03189 Exophiala mesophila PV10_03189 I 0.000
PV09_01645 Verruconis gallopava PV09_01645 I 0.000
PTT_09501 Pyrenophora teres PTT_09501 I 0.000
PTRG_07994 Pyrenophora triticirepentis PTRG_07994 I 0.000
PODANS_1_17900 Podospora anserina PODANS_1_17900 I 0.000
PITC_020790 Penicillium italicum PITC_020790 I 0.000
PFICI_01432 Pestalotiopsis fici PFICI_01432 I 0.000
SPBR_07829 Sporothrix brasiliensis SPBR_07829 I 0.000
OIDMADRAFT_202703 Oidiodendron maius OIDMADRAFT_202703 I 0.000
OCS_06036 Ophiocordyceps sinensis OCS_06036 I 0.000
NEUTE1DRAFT_105272 Neurospora tetrasperma NEUTE1DRAFT_105272 I 0.000
MYCTH_2297066 Myceliophthora thermophila MYCTH_2297066 I 0.000
Mycgr3G66896 Zymoseptoria tritici Mycgr3G66896 I 0.000
MYCFIDRAFT_86007 Pseudocercospora fijiensis MYCFIDRAFT_86007 I 0.000
MPH_10926 Macrophomina phaseolina MPH_10926 I 0.000
MGU_06448 Metarhizium guizhouense MGU_06448 I 0.000
MGG_00342 Magnaporthe oryzae MGG_00342 I 0.000
MBR_06029 Metarhizium brunneum MBR_06029 I 0.000
UCRPA7_4041 Togninia minima UCRPA7_4041 I 0.000
AB03286.1 Alternaria brassicicola AB03286.1 I 0.000
estExt_Genewise1Plus.C_chr_12913 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_12913 I 0.000
estExt_Genewise1.C_30429 Cochliobolus heterostrophus C5 estExt_Genewise1.C_30429 I 0.000
estExt_fgenesh3_kg.C_40226 Neurospora discreta estExt_fgenesh3_kg.C_40226 I 0.000
estExt_fgenesh1_pg.C_10877 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_10877 I 0.000
Z517_02456 Fonsecaea pedrosoi Z517_02456 I 0.000
X797_005785 Metarhizium robertsii X797_005785 I 0.000
W97_01199 Coniosporium apollinis W97_01199 I 0.000
VHEMI02403 Torrubiella hemipterigena VHEMI02403 I 0.000
VDBG_06054 Verticillium alfalfae VDBG_06054 I 0.000
VDAG_03214 Verticillium dahliae VDAG_03214 I 0.000
MBM_00160 Marssonina brunnea MBM_00160 I 0.000
UCREL1_941 Eutypa lata UCREL1_941 I 0.000
U727_00431281371 Penicillium solitum U727_00431281371 I 0.000
TSTA_058130 Talaromyces stipitatus TSTA_058130 I 0.000
TRV_01964 Trichophyton verrucosum TRV_01964 I 0.000
TRIVIDRAFT_227332 Trichoderma virens TRIVIDRAFT_227332 I 0.000
TRIREDRAFT_57840 Trichoderma reesei TRIREDRAFT_57840 I 0.000
TRIATDRAFT_301441 Trichoderma atroviride TRIATDRAFT_301441 I 0.000
THITE_2112534 Thielavia terrestris THITE_2112534 I 0.000
TESG_03658 Trichophyton tonsurans TESG_03658 I 0.000
TEQG_00005 Trichophyton equinum TEQG_00005 I 0.000
CH063_05360 Colletotrichum higginsianum CH063_05360 I 0.000
SNOG_04391 Stagonospora nodorum SNOG_04391 I 0.000
CTHT_0003600 Chaetomium thermophilum CTHT_0003600 I 0.000
CSUB01_01401 Colletotrichum sublineola CSUB01_01401 I 0.000
CPUR_01747 Claviceps purpurea CPUR_01747 I 0.000
COCVIDRAFT_31288 Bipolaris victoriae COCVIDRAFT_31288 I 0.000
COCSADRAFT_93076 Bipolaris sorokiniana COCSADRAFT_93076 I 0.000
COCMIDRAFT_80851 Bipolaris oryzae COCMIDRAFT_80851 I 0.000
COCCADRAFT_112191 Bipolaris zeicola COCCADRAFT_112191 I 0.000
COCC4DRAFT_163657 Bipolaris maydis COCC4DRAFT_163657 I 0.000
Cob_01611 Colletotrichum orbiculare Cob_01611 I 0.000
CMQ_566 Grosmannia clavigera CMQ_566 I 0.000
DOTSEDRAFT_164596 Dothistroma septosporum DOTSEDRAFT_164596 I 0.000
CGGC5_2437 Colletotrichum gloeosporioides CGGC5_2437 I 0.000
CFIO01_11126 Colletotrichum fioriniae CFIO01_11126 I 0.000
CCM_01128 Cordyceps militaris CCM_01128 I 0.000
CADAORAG00008810 Aspergillus oryzae CADAORAG00008810 I 0.000
Bcin15g00200 Botrytis cinerea Bcin15g00200 I 0.000
BBA_06988 Beauveria bassiana BBA_06988 I 0.000
BAUCODRAFT_249790 Baudoinia compniacensis BAUCODRAFT_249790 I 0.000
AUEXF2481DRAFT_5486 Aureobasidium subglaciale AUEXF2481DRAFT_5486 I 0.000
ARB_03643 Arthroderma benhamiae ARB_03643 I 0.000
ACRE_034210 Acremonium chrysogenum ACRE_034210 I 0.000
VDBG_06054 Verticillium albo atrum VDBG_06054 I 0.000
H102_06775 Trichophyton rubrum H102_06775 I 0.000
MAPG_08236 Magnaporthe poae MAPG_08236 I 0.000
MANI_013653 Metarhizium anisopliae MANI_013653 I 0.000
MAM_03661 Metarhizium album MAM_03661 I 0.000
MAJ_04559 Metarhizium majus MAJ_04559 I 0.000
MAC_07148 Metarhizium acridum MAC_07148 I 0.000
M438DRAFT_282148 Aureobasidium pullulans M438DRAFT_282148 I 0.000
M437DRAFT_76008 Aureobasidium melanogenum M437DRAFT_76008 I 0.000
LEMA_P026860.1 Leptosphaeria maculans LEMA_P026860.1 I 0.000
HMPREF1624_07695 Sporothrix schenckii HMPREF1624_07695 I 0.000
H105_06815 Trichophyton soudanense H105_06815 I 0.000
EURHEDRAFT_518989 Aspergillus ruber EURHEDRAFT_518989 I 0.000
H101_02270 Trichophyton interdigitale H101_02270 I 0.000
GMDG_08213 Pseudogymnoascus destructans GMDG_08213 I 0.000
GLRG_03942 Colletotrichum graminicola GLRG_03942 I 0.000
GGTG_01216 Gaeumannomyces graminis GGTG_01216 I 0.000
FVEG_01443 Fusarium verticillioides FVEG_01443 I 0.000
FPSE_03349 Fusarium pseudograminearum FPSE_03349 I 0.000
FOXG_00073 Fusarium oxysporum FOXG_00073 I 0.000
FGRRES_01313 Fusarium graminearum FGRRES_01313 I 0.000
FFUJ_01507 Fusarium fujikuroi FFUJ_01507 I 0.000
F503_06775 Ophiostoma piceae uamh F503_06775 I 0.000
EV44_g2223 Erysiphe necator EV44_g2223 I 0.000
flbB Aspergillus nidulans CADANIAG00000648 N 0.000