CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

cassava31102.valid.m1 *(Manihot esculenta)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	cassava31102.valid.m1	T227099_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.858	0.842
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.858	0.842
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.858	0.842
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.858	0.842
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.816	0.807
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.815	0.772
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.815	0.772
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.809	0.842
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.809	0.825
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.809	0.825
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.809	0.825
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.796	0.789
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.796	0.789
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.796	0.789
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.796	0.789
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.717	0.649
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.717	0.649
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.716	0.667
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.716	0.667
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.712	0.614
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.712	0.614
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.680	0.789
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.680	0.789
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.660	0.772
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.660	0.772
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.613	0.614
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.613	0.614
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
cassava31102.valid.m1	Homeodomain	55	111	AEKKRRLTLDQVKALEKTFEVENKLEPERKQRLAEELGLQPRQVAIWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Manihot esculenta* TFs

815 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
V565_004480	Rhizoctonia solani	V565_004480	I	0.000
PISMIDRAFT_670921	Pisolithus microcarpus	PISMIDRAFT_670921	N	0.000
M408DRAFT_220715	Serendipita vermifera	M408DRAFT_220715	N	0.000
M408DRAFT_326089	Serendipita vermifera	M408DRAFT_326089	N	0.000
M413DRAFT_440930	Hebeloma cylindrosporum	M413DRAFT_440930	N	0.000
Moror_1059	Moniliophthora roreri	Moror_1059	N	0.000
PAXRUDRAFT_13206	Paxillus rubicundulus	PAXRUDRAFT_13206	N	0.000
PHACADRAFT_249397	Phanerochaete carnosa	PHACADRAFT_249397	N	0.000
PHLGIDRAFT_35648	Phlebiopsis gigantea	PHLGIDRAFT_35648	N	0.000
PIIN_03370	Piriformospora indica	PIIN_03370	N	0.000
PILCRDRAFT_811082	Piloderma croceum	PILCRDRAFT_811082	N	0.000
M407DRAFT_91983	Tulasnella calospora	M407DRAFT_91983	N	0.000
PLEOSDRAFT_1029614	Pleurotus ostreatus	PLEOSDRAFT_1029614	N	0.000
SCHCODRAFT_47142	Schizophyllum commune	SCHCODRAFT_47142	N	0.000
SERLA73DRAFT_177169	Serpula lacrymans	SERLA73DRAFT_177169	N	0.000
V565_033130	Rhizoctonia solani	V565_033130	N	0.000
V565_035960	Rhizoctonia solani	V565_035960	N	0.000
fgenesh1_pg.C_scaffold_2000701	Phanerochaete chrysosporium	fgenesh1_pg.C_scaffold_2000701	N	0.000
e_gw1.4.2249.1	Heterobasidion annosum	e_gw1.4.2249.1	N	0.000
FOMPIDRAFT_138732	Fomitopsis pinicola	FOMPIDRAFT_138732	N	0.000
BN946_scf184908.g73	Trametes cinnabarina	BN946_scf184908.g73	N	0.000
BOTBODRAFT_26713	Botryobasidium botryosum	BOTBODRAFT_26713	N	0.000
BOTBODRAFT_26714	Botryobasidium botryosum	BOTBODRAFT_26714	N	0.000
CC1G_00050	Coprinopsis cinerea	CC1G_00050	N	0.000
CERSUDRAFT_111398	Ceriporiopsis subvermispora	CERSUDRAFT_111398	N	0.000
CY34DRAFT_808328	Suillus luteus	CY34DRAFT_808328	N	0.000
DICSQDRAFT_61352	Dichomitus squalens	DICSQDRAFT_61352	N	0.000
FIBRA_01455	Fibroporia radiculosa	FIBRA_01455	N	0.000
AGABI2DRAFT_191713	Agaricus bisporus	AGABI2DRAFT_191713	N	0.000
GALMADRAFT_23139	Galerina marginata	GALMADRAFT_23139	N	0.000
GLOTRDRAFT_55344	Gloeophyllum trabeum	GLOTRDRAFT_55344	N	0.000
HETIRDRAFT_240562	Heterobasidion irregulare	HETIRDRAFT_240562	N	0.000
JAAARDRAFT_28293	Jaapia argillacea	JAAARDRAFT_28293	N	0.000
K443DRAFT_672537	Laccaria amethystina	K443DRAFT_672537	N	0.000
M378DRAFT_8932	Amanita muscaria	M378DRAFT_8932	N	0.000
M404DRAFT_92668	Pisolithus tinctorius	M404DRAFT_92668	N	0.000
M407DRAFT_127438	Tulasnella calospora	M407DRAFT_127438	N	0.000

cassava31102.valid.m1 (Manihot esculenta) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

815 Related TFs

cassava31102.valid.m1 **(Manihot esculenta)
Homeodomain**