gw.578.81.1 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gw.578.81.1 T227655_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.633 0.481
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.629 0.463
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.629 0.463
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.623 0.463
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.623 0.463
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.623 0.463
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.623 0.463
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.623 0.463
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.623 0.463
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.623 0.463
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.623 0.463
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.623 0.463
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.623 0.463
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.623 0.463
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.617 0.463
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.617 0.463
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.617 0.463
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.617 0.463
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.617 0.463
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.617 0.463
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.617 0.463
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.617 0.463
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.617 0.463
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.617 0.463
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.617 0.463
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.617 0.463
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.617 0.463
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.617 0.463
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.617 0.463
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.617 0.463
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.617 0.463
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.617 0.444
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.617 0.444
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.617 0.444
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.617 0.444
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.617 0.444
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.617 0.444
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.617 0.444
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.617 0.444
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.578.81.1 Homeodomain 1 55

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

273 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU07952 Neurospora crassa NCU07952 D
MCYG_01140 Microsporum canis MCYG_01140 I
SNOG_05002 Stagonospora nodorum SNOG_05002 I
VDBG_06048 Verticillium albo atrum VDBG_06048 I
A1O3_09941 Capronia epimyces A1O3_09941 I
A1O5_05402 Cladophialophora psammophila A1O5_05402 I
A1O7_06547 Cladophialophora yegresii A1O7_06547 I
A1O9_10759 Exophiala aquamarina A1O9_10759 I
ACRE_066120 Acremonium chrysogenum ACRE_066120 I
AOL_s00110g91 Arthrobotrys oligospora AOL_s00110g91 I
ARB_00172 Arthroderma benhamiae ARB_00172 I
AUEXF2481DRAFT_24650 Aureobasidium subglaciale AUEXF2481DRAFT_24650 I
BAUCODRAFT_130739 Baudoinia compniacensis BAUCODRAFT_130739 I
BBA_06961 Beauveria bassiana BBA_06961 I
Bcin01g08230 Botrytis cinerea Bcin01g08230 I
BDDG_08511 Blastomyces dermatitidis BDDG_08511 I
BGHDH14_bgh02089 Blumeria graminis BGHDH14_bgh02089 I
ACLA_027670 Aspergillus clavatus CADACLAG00001684 I
CADAFLAG00009850 Aspergillus flavus CADAFLAG00009850 I
AFUA_1G06900 Aspergillus fumigatus CADAFUAG00008684 I
CADANGAG00014230 Aspergillus niger CADANGAG00014230 I
ANIA_05726 Aspergillus nidulans CADANIAG00003336 I
CADAORAG00000448 Aspergillus oryzae CADAORAG00000448 I
ATEG_02928 Aspergillus terreus CADATEAG00010284 I
NFIA_017790 Neosartorya fischeri CADNFIAG00001566 I
CCM_06653 Cordyceps militaris CCM_06653 I
CFIO01_13401 Colletotrichum fioriniae CFIO01_13401 I
CGGC5_2430 Colletotrichum gloeosporioides CGGC5_2430 I
CHGG_05033 Chaetomium globosum CHGG_05033 I
CMQ_7368 Grosmannia clavigera CMQ_7368 I
Cob_01618 Colletotrichum orbiculare Cob_01618 I
COCC4DRAFT_144568 Bipolaris maydis COCC4DRAFT_144568 I
COCCADRAFT_108895 Bipolaris zeicola COCCADRAFT_108895 I
COCMIDRAFT_82997 Bipolaris oryzae COCMIDRAFT_82997 I
COCSADRAFT_249666 Bipolaris sorokiniana COCSADRAFT_249666 I
COCVIDRAFT_98457 Bipolaris victoriae COCVIDRAFT_98457 I
CPC735_003570 Coccidioides posadasii CPC735_003570 I
CPUR_01775 Claviceps purpurea CPUR_01775 I
CSUB01_01407 Colletotrichum sublineola CSUB01_01407 I
CTHT_0031440 Chaetomium thermophilum CTHT_0031440 I
DOTSEDRAFT_152208 Dothistroma septosporum DOTSEDRAFT_152208 I
DRE_04887 Drechslerella stenobrocha DRE_04887 I
EPUS_01490 Endocarpon pusillum EPUS_01490 I
EURHEDRAFT_446038 Aspergillus ruber EURHEDRAFT_446038 I
F503_02827 Ophiostoma piceae uamh F503_02827 I
FFUJ_01538 Fusarium fujikuroi FFUJ_01538 I
FGRRES_01341 Fusarium graminearum FGRRES_01341 I
FOXG_00040 Fusarium oxysporum FOXG_00040 I
FPSE_03379 Fusarium pseudograminearum FPSE_03379 I
FVEG_01476 Fusarium verticillioides FVEG_01476 I
G647_05990 Cladophialophora carrionii G647_05990 I
GGTG_09945 Gaeumannomyces graminis GGTG_09945 I
GLRG_03936 Colletotrichum graminicola GLRG_03936 I
GMDG_07025 Pseudogymnoascus destructans GMDG_07025 I
GSTUM_00003205001 Tuber melanosporum GSTUM_00003205001 I
H072_3701 Dactylellina haptotyla H072_3701 I
H101_05158 Trichophyton interdigitale H101_05158 I
H102_01127 Trichophyton rubrum H102_01127 I
H105_01140 Trichophyton soudanense H105_01140 I
HCBG_02406 Histoplasma capsulatum HCBG_02406 I
HMPREF1120_03777 Exophiala dermatitidis HMPREF1120_03777 I
HMPREF1541_01496 Cyphellophora europaea HMPREF1541_01496 I
HMPREF1624_02702 Sporothrix schenckii HMPREF1624_02702 I
LEMA_P046340.1 Leptosphaeria maculans LEMA_P046340.1 I
M437DRAFT_48815 Aureobasidium melanogenum M437DRAFT_48815 I
M438DRAFT_134375 Aureobasidium pullulans M438DRAFT_134375 I
MAC_04600 Metarhizium acridum MAC_04600 I
MAJ_04587 Metarhizium majus MAJ_04587 I
MAM_03690 Metarhizium album MAM_03690 I
MANI_013553 Metarhizium anisopliae MANI_013553 I
MAPG_02863 Magnaporthe poae MAPG_02863 I
MBM_06247 Marssonina brunnea MBM_06247 I
MBR_06001 Metarhizium brunneum MBR_06001 I
MCYG_01140 Arthroderma otae MCYG_01140 I
MGG_05133 Magnaporthe oryzae MGG_05133 I
MGU_06476 Metarhizium guizhouense MGU_06476 I
MGYG_01691 Microsporum gypseum MGYG_01691 I
MPH_00854 Macrophomina phaseolina MPH_00854 I
MYCTH_59287 Myceliophthora thermophila MYCTH_59287 I
NechaG65383 Fusarium solani NechaG65383 I
NEUTE1DRAFT_128338 Neurospora tetrasperma NEUTE1DRAFT_128338 I
OCS_06574 Ophiocordyceps sinensis OCS_06574 I
OIDMADRAFT_26712 Oidiodendron maius OIDMADRAFT_26712 I
PAAG_07831 Paracoccidioides sp lutzii PAAG_07831 I
PABG_07760 Paracoccidioides brasiliensis PABG_07760 I
PCH_Pc13g03120 Penicillium rubens PCH_Pc13g03120 I
PDE_02584 Penicillium oxalicum PDE_02584 I
PDIP_68900 Penicillium digitatum PDIP_68900 I
PEX1_101950 Penicillium expansum PEX1_101950 I
PFICI_00980 Pestalotiopsis fici PFICI_00980 I
PITC_089390 Penicillium italicum PITC_089390 I
PMAA_026570 Talaromyces marneffei PMAA_026570 I
PODANS_3_1720 Podospora anserina PODANS_3_1720 I
PTRG_04116 Pyrenophora triticirepentis PTRG_04116 I
PTT_19703 Pyrenophora teres PTT_19703 I
PV04_06949 Capronia semiimmersa PV04_06949 I
PV05_08266 Exophiala xenobiotica PV05_08266 I
PV06_01972 Exophiala oligosperma PV06_01972 I
PV07_03056 Cladophialophora immunda PV07_03056 I
PV08_02892 Exophiala spinifera PV08_02892 I
PV09_03810 Verruconis gallopava PV09_03810 I
PV10_08344 Exophiala mesophila PV10_08344 I
PV11_06352 Exophiala sideris PV11_06352 I
PVAR5_1858 Byssochlamys spectabilis PVAR5_1858 I
S40285_06160 Stachybotrys chlorohalonata S40285_06160 I
S40288_04088 Stachybotrys chartarum S40288_04088 I
SAPIO_CDS3076 Scedosporium apiospermum SAPIO_CDS3076 I
SBOR_1289 Sclerotinia borealis SBOR_1289 I
SEPMUDRAFT_152049 Sphaerulina musiva SEPMUDRAFT_152049 I
SETTUDRAFT_132094 Setosphaeria turcica SETTUDRAFT_132094 I
SMAC_08565 Sordaria macrospora SMAC_08565 I
SNOG_05002 Phaeosphaeria nodorum SNOG_05002 I
SPBR_02428 Sporothrix brasiliensis SPBR_02428 I
SS1G_04676 Sclerotinia sclerotiorum SS1G_04676 I
TEQG_02078 Trichophyton equinum TEQG_02078 I
TESG_07609 Trichophyton tonsurans TESG_07609 I
THITE_2116088 Thielavia terrestris THITE_2116088 I
TRIATDRAFT_173231 Trichoderma atroviride TRIATDRAFT_173231 I
TRIREDRAFT_36391 Trichoderma reesei TRIREDRAFT_36391 I
TRIVIDRAFT_232155 Trichoderma virens TRIVIDRAFT_232155 I
TRV_07311 Trichophyton verrucosum TRV_07311 I
TSTA_072300 Talaromyces stipitatus TSTA_072300 I
U727_0043368031 Penicillium solitum U727_0043368031 I
UCREL1_10204 Eutypa lata UCREL1_10204 I
UCRNP2_5327 Neofusicoccum parvum UCRNP2_5327 I
UREG_01940 Uncinocarpus reesii UREG_01940 I
UV8b_2987 Ustilaginoidea virens UV8b_2987 I
V499_02401 Pseudogymnoascus pannorum V499_02401 I
VDAG_03208 Verticillium dahliae VDAG_03208 I
VDBG_06048 Verticillium alfalfae VDBG_06048 I
VHEMI08976 Torrubiella hemipterigena VHEMI08976 I
W97_08085 Coniosporium apollinis W97_08085 I
W97_09244 Coniosporium apollinis W97_09244 I
X797_005757 Metarhizium robertsii X797_005757 I
Z517_05592 Fonsecaea pedrosoi Z517_05592 I
Z518_05937 Rhinocladiella mackenziei Z518_05937 I
Z519_08276 Cladophialophora bantiana Z519_08276 I
AAE_estExt_fgenesh1_pg.C_chr_120283 Mycosphaerella graminicola AAE_estExt_fgenesh1_pg.C_chr_120283 I
estExt_Genewise1Plus.C_130195 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_130195 I
estExt_Genewise1Plus.C_31872 Neurospora discreta estExt_Genewise1Plus.C_31872 I
estExt_Genewise1Plus.C_sca_1_chr1_3_00050 Nectria haematococca estExt_Genewise1Plus.C_sca_1_chr1_3_00050 I
AB03945.1 Alternaria brassicicola AB03945.1 I
estExt_fgenesh1_pg.C_30488 Cryphonectria parasitica estExt_fgenesh1_pg.C_30488 I
fgenesh1_pm.00129_#_72 Aspergillus carbonarius fgenesh1_pm.00129_#_72 I
Pc13g03120 Penicillium chrysogenum Pc13g03120 I
PMAA_026570 Penicillium marneffei PMAA_026570 I
A1O9_08519 Exophiala aquamarina A1O9_08519 N
EV44_g2286 Erysiphe necator EV44_g2286 N
Mycgr3G50313 Zymoseptoria tritici Mycgr3G50313 N