Cagra.4093s0017 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.4093s0017 T228243_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.866 0.964
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.866 0.964
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.861 0.911
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.861 0.911
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4093s0017.1.p Homeodomain 14 73

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MLOC_15181 Hordeum vulgare MLOC_15181 N 0.000
MLOC_43730 Hordeum vulgare MLOC_43730 N 0.000
Traes_4AL_F023A8691 Triticum aestivum Traes_4AL_F023A8691 N 0.000
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.000
Traes_4DS_2B4E99BE4 Triticum aestivum Traes_4DS_2B4E99BE4 N 0.000
Traes_4DS_82065CB2C Triticum aestivum Traes_4DS_82065CB2C N 0.000
TRIUR3_05949 Triticum urartu TRIUR3_05949 N 0.000
Pavir.J35282 Panicum virgatum Pavir.J35282 N 0.000